Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04012 ATGAAGAACGACCCAACCAATTTATGTTTTTTTTTCCTCCTAATCCTCCTACCGGGGATTCCTCTCACCGCCGCACAAACCCCAACCCAAAACACCGACCCGAACCCGAATCTCAACGAGTTCAACCCTTCCTTCGCGATAATCATCGTAATTTTAGTTGCAGCTCTTTTTCTAATGGGTTTCTTCTCCATCTACATTCGCCAGTGCGCTGATTCTCCGAATAACAGCGTTCTCCCTCTCACCAACACGCGTTCCAGAAGAGGAGGGCGTGGGCTTGATCCTGCGGTGATCGAAACATTCCCAATTCTCGAATACTCCGAGGTTAAGATCCACAAGATTGGGAAGGAAGCACTGGAATGCGCCGTTTGTTTATGCGAGTTTGAAGACACCGAAACGCTGCGTTTAATCCCCAAGTGCGATCACGTTTTCCACCCTGAGTGCATCGATGAGTGGTTGGGTTCTCACACCACGTGCCCCGTTTGTCGCTCCAACCTTGTTCCCCAACCTGGTGAATCCGTTCACGGTGTTCCCGTTCCCCAACCTGAGTCACAAAACGACGTCGTGCAAACCGTGCCAGATCAGCAAAACGCGGAGGTTGTTGTTGACCCTGTTTTACCACCTCAGCCAGAAGTGATTTCAATTTCTTTGAATAAAACATTGAACCGGAACCGCACGCGTGGTTCACAGTCGAACCGGACACGCCGGTTTCCACGTTCACACTCGACCGGTCATTCATTGGTCCAACCGTGTGAAAACACTGAACGGTTCACTTTGAGACTCCCTTTTGAGGTTAGGAAGCAAATAATGAACCGGCAATTACAACGTGCAAGCAGCTTGATTGTGTTACCTAGAGAAAGTAGCTCAAGGCAGGGTTACCGAACCGGAGGGGAAGGAAGTAGTAGAGGGAAAAATTTGAGACGGTTGAGCCGGAGTTTTAAATCAGACCGGTGGGTTTTTAATAAAGCTCCATCATTCTTAATGAGGGCACTGTCTATTAGGTCACCGAAGGTGGTTAATAGCGACGGTGAAGGAACCTCTTCCTCCACCTCCGCCGCCGCCCCTATGATGCCGTCGTCGGCCGTGGACTCCGCCCGCCCTCCGGTTTGA 1107 0.505 MKNDPTNLCFFFLLILLPGIPLTAAQTPTQNTDPNPNLNEFNPSFAIIIVILVAALFLMGFFSIYIRQCADSPNNSVLPLTNTRSRRGGRGLDPAVIETFPILEYSEVKIHKIGKEALECAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRSNLVPQPGESVHGVPVPQPESQNDVVQTVPDQQNAEVVVDPVLPPQPEVISISLNKTLNRNRTRGSQSNRTRRFPRSHSTGHSLVQPCENTERFTLRLPFEVRKQIMNRQLQRASSLIVLPRESSSRQGYRTGGEGSSRGKNLRRLSRSFKSDRWVFNKAPSFLMRALSIRSPKVVNSDGEGTSSSTSAAAPMMPSSAVDSARPPV* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04012 368 Pfam Ring finger domain 119 162 IPR001841 -
Rops8g04012 368 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Rops8g04012 368 MobiDBLite consensus disorder prediction 338 356 - -
Rops8g04012 368 MobiDBLite consensus disorder prediction 219 246 - -
Rops8g04012 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 167 IPR013083 -
Rops8g04012 368 MobiDBLite consensus disorder prediction 337 368 - -
Rops8g04012 368 SMART ring_2 120 161 IPR001841 -
Rops8g04012 368 MobiDBLite consensus disorder prediction 285 307 - -
Rops8g04012 368 SUPERFAMILY RING/U-box 119 169 - -
Rops8g04012 368 CDD RING-H2_EL5-like 119 162 - -
Rops8g04012 368 PANTHER RING FINGER DOMAIN-CONTAINING 28 171 - -
Rops8g04012 368 FunFam E3 ubiquitin-protein ligase ATL6 80 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04012 Rops-Chr8 81549010 81550336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04012 13 368 Rapid Response to Elicitors AT3G05200 43.641 5.68e-90 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04012 K10664 - gmx:100781706 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04012 8 81549010 81550336 Rops8g04012 8 81549010 81550336 ECH
Rops8g04012 8 81549010 81550336 Rops6g01825 6 36003185 36004588 PCT