Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04007 ATGGATCATCAAGGGCATAGTCAGAACCCATCTATGGGGGTTGTCGGTAGTGGAGCTCAACTAACGTATGGTTCTAACCCTTATCATCCAAACCAAATAACTGGGGCACCAGGGGCGGTTGTTACGTCAGTTGGGAACATTCAATCCACTGGTCAACCTGCTGGAGCTCAGCTGGGACAGCATCAACTTGCTTATCAGCACATTCATCAGCAACAACAGCAGCAACTTCAGCAGCAGCTCCAAACCTTTTGGGCAAATCAATACCAAGAAATTGAGAAGGTTAATGATTTCAAGAACCACAGTCTTCCCCTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGAATGATATCAGCTGAGGCACCAGTCATATTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGAGAACACTTCAGAAAAATGATATTGCAGCAGCAATCACAAGGACTGATATCTTTGATTTCTTGGTTGACATCGTGCCTCGTGAGGACTTGAAAGATGAAGTGCTTGCATCCATCCCAAGGGGGACAATGCCTGTTGCAGGGCCTGCTGATGCTCTTCCTTATTGCTATATGCCACCTCAGCATGCCCCCCAAGTTGGAACTGCTGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAATATGTATGCTCAGCAATCTCATCCCTACATGGCACCACAGATGTGGGCACAGCCACCAGACCAGCGACCATCATCTCCTGATCATTAG 783 0.4662 MDHQGHSQNPSMGVVGSGAQLTYGSNPYHPNQITGAPGAVVTSVGNIQSTGQPAGAQLGQHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHAPQVGTAGVIMGKPVMDPNMYAQQSHPYMAPQMWAQPPDQRPSSPDH* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04007 260 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 101 164 IPR003958 -
Rops8g04007 260 FunFam Nuclear transcription factor Y subunit gamma 66 179 - -
Rops8g04007 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Rops8g04007 260 SUPERFAMILY Histone-fold 69 173 IPR009072 GO:0046982
Rops8g04007 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 66 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04007 Rops-Chr8 81488293 81491001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04007 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.290 3.26e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Rops8g04007 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04007 K08066 - gmx:100527803 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04007 8 81488293 81491001 Rops6g01832 6 36083471 36084274 ECH
Rops8g04007 8 81488293 81491001 Rops8g04007 8 81488293 81491001 ECH
Rops8g04007 8 81488293 81491001 Rops6g01832 6 36083471 36084274 PCT