Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03993 ATGCAAGACATTTTTGGATCAGTTCGCCGATCACTGGTGTTCCGTGCTTCGCCGGAGAACGAAGAACACTCGCTCGGAGGAACCCTAGTTGATAAGATCAATTATTGCATCCGAAATTCTAGAGTCTTCTCCAAACCCTCGCTGTCGTCTCCGCCTATCGCCACCGACACTACTGCTCCTCCGATCCGATGGCGCAAAGGCGAGTTGATCGGTTGCGGTGCCTTTGGCCATGTTTACGTTGGAATGAATCTCGATTCCGGAGAGCTTCTGGCCGTTAAACAGGTTTTGATTGCAGCAAGTAGTGCATCGAAGGCGAAGGCACAGGCTCACATAAAAGAGCTTGAGGAAGAAGTTAAACTGCTTAAAGATCTTTCACATCCCAACATTGTTAGATATTTGGGTACGGTTGTTGAAGAGGACACCTTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCATTATTGGGGAAGTTTGGAGCTTTCCCTGAGGCTGTCATAAGAACTTACACGAAGCAGTTACTGCTTGGACTTGAGTACTTGCACAAAAATGGAATCATGCACAGAGATATTAAGGGAGCCAATATTCTTGTAGATAATAAAGGGTGCATAAAACTTGCAGATTTTGGGGCATCCAAACAGGTCGTTGAGCTGGCTACCATTTCCGGTGCCAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGGCATAGCTTCTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGCCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACTAAGTCTCATCCACCAATCCCTGATCATCTCTCTGCTGGAGCAAAAGATTTTCTGCTCAAGTGTTTGCAGAAGGAACCATATTTGAGGTCATCGGCATCAGAACTGCTGCAGCATCCCTTTGTTACCGGTGAACATATGGATTCTCTTCCTCAGTCATCAACTTCCATGGAAAATTTTGGAGCTTCTTCACCATCATGTGCCACAAATGTTGAATCCTTACTTTGCTGCTCAACAGTAAATCCTCAGGACTCGGGAAATAAACAGTTATGGGGAATGAGCAATGATGATGACATGTGTGAGATTGATGACAAAGAAGACTTCCCAGAGAATGATGTCAAATACAGATCATTGATGTCAGATAATATTGAGAGTTTCAACCCGATGTCTGATCCCTCTGATGATTGGGGGTGTAAATTTGATGCAAGTCCAGAACTGGAAAAAAGTGGAGTTAGTTTTGTCACTGATGAAAGTTACATGCCACCTGGTCAGTCGGAGGCTAATAAGGGGCAGAAAGATTTTTCCTTTACAAGTGTGCCATCTCTGTCAGAGGAAGATGATGAGCTCACAGAGTCAAAAATTAAGGCCTTTTTGGATGAGAAGGCTTTTGAACTGAAAAAACTGCAGACACCTTTATATGAAGAGTTTTACAACAGTTTAAATACATCTTGTTCTCCCAATGTGATTGAGAGCACAAGTGATGACACTGCTGCTCGAAAATTCTTAAAATTACCTCCTAAAAGCAGGTCACCGAGTCGGGCACCAATTAGCTCTCCATCTAAAGCAGTTGACAATGCTGGAAGTCCTGGGAGTAATGGCAGGTCCTCATCAACTGTCGGCAATGTAAATAATCGTGGTTCACAGGATGTCCCAGCATCTCCCCTTAATGAATGGAAAGGACTAATAGTGGACTCCAAGCAGGAGCCCAATAGCCCAAGTTTAAACTTCACTGATGAGAGACAGAGGAAGTGGAAAGAAGAGCTGAAGCAGGAGCTTGATAGAAAGCGAGAAATGATGCGCCAAGCTGGTAAGGGGGGAAAGACATCTTCACCAAAAGATCGAGCTTTACATCGACAGATAGAACGGACAAGATTTGCTTCTCCCAGCAAATAA 1968 0.4451 MQDIFGSVRRSLVFRASPENEEHSLGGTLVDKINYCIRNSRVFSKPSLSSPPIATDTTAPPIRWRKGELIGCGAFGHVYVGMNLDSGELLAVKQVLIAASSASKAKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVVEEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSAGAKDFLLKCLQKEPYLRSSASELLQHPFVTGEHMDSLPQSSTSMENFGASSPSCATNVESLLCCSTVNPQDSGNKQLWGMSNDDDMCEIDDKEDFPENDVKYRSLMSDNIESFNPMSDPSDDWGCKFDASPELEKSGVSFVTDESYMPPGQSEANKGQKDFSFTSVPSLSEEDDELTESKIKAFLDEKAFELKKLQTPLYEEFYNSLNTSCSPNVIESTSDDTAARKFLKLPPKSRSPSRAPISSPSKAVDNAGSPGSNGRSSSTVGNVNNRGSQDVPASPLNEWKGLIVDSKQEPNSPSLNFTDERQRKWKEELKQELDRKREMMRQAGKGGKTSSPKDRALHRQIERTRFASPSK* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03993 655 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 51 340 - -
Rops8g03993 655 MobiDBLite consensus disorder prediction 635 649 - -
Rops8g03993 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Rops8g03993 655 Pfam Protein kinase domain 65 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03993 655 ProSiteProfiles Protein kinase domain profile. 64 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03993 655 Coils Coil 97 124 - -
Rops8g03993 655 CDD STKc_MAPKKK 63 327 - -
Rops8g03993 655 FunFam Serine/threonine-protein kinase STE11 60 154 - -
Rops8g03993 655 MobiDBLite consensus disorder prediction 446 468 - -
Rops8g03993 655 FunFam Mitogen-activated protein kinase kinase kinase 2 63 357 - -
Rops8g03993 655 MobiDBLite consensus disorder prediction 621 655 - -
Rops8g03993 655 SMART serkin_6 64 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03993 655 MobiDBLite consensus disorder prediction 527 607 - -
Rops8g03993 655 MobiDBLite consensus disorder prediction 536 576 - -
Rops8g03993 655 Coils Coil 606 630 - -
Rops8g03993 655 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524
Rops8g03993 655 SUPERFAMILY Protein kinase-like (PK-like) 63 351 IPR011009 -
Rops8g03993 655 MobiDBLite consensus disorder prediction 446 472 - -
Rops8g03993 655 Gene3D Transferase(Phosphotransferase) domain 1 63 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03993 Rops-Chr8 81325703 81331051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03993 1 655 MAP Kinase Kinase Kinase AT1G54960 58.561 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Rops8g03993 Pkinase 5.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03993 K20606 - gmx:100807537 1077.39