Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03990 ATGTTTAAGAACATAGTGAATGCCCTCAACAGCGATGACAACAAGAGCAATCACATCATAGGGACAGTGATCTTGATGAAGAAAAATGTGCTGGACTTCAATGATTTGAGTGCCTCCTTTCTTGATCGTCTTCATGAGTTTGTGGGCAAAGGGGTTTCTCTCCAACTCATAAGTGCTGTTAAACTTGACCCTGAGAATGGCATGAAAGGCAAACTTGGGAAGCCTGCATATCTTGAAGACTGGATTACCACAATCACTCCCTTGACAGCTGGAGAATCGGCATTTAGAGTTACCTTTGATTGGGACGAGGATATAGGAACACCAGGAGCATTTTTAATAAGAAATAACCATCACAGTGAGTTCTACCTAAGAAGCTTGACACTTGAAAATGTTCCAGGCCAAGGTGACATCCACTTTATCTGCAACTCTTGGGTATACCCTGCTCAAAAATATGAAAAGGATCGCATTTTCTTTAGTAACAAGACATATCTTCTAAGTGAAACACCAGTGCCGCTTCTTAAGTTTAGAGAAGAAGAACTAGAGAGTCTAAGAGGAGATGGGAGAGGGAACCTACAAGAATGGGATAGGGTCTATGATTATGCATACTATAATGATTTGGGTGATCCAGATAAAGATCCACAATATGCTCGTCCAGTTCTTGGAGGATCCAGTGAATATCCCTATCCTAGGAGGGGAAGAACTGGTAGACCACCCGCCAAGTCAGATGTTAATAATGAGAGTAGATTGAACCTTGCCATGAGCTTAGACATCTATGTTCCAAGGGATGAAAGATTTGGTCACTTGAAAATGTCAGACTTTCTTGCTAATGCATTGAAATCCATTGTTCAAGTTATCAAACCCGAGCTGGAATCTATATTTGACAGCACCCCTGATGAGTTTGATAGCTTTGAAGATGTGCTTAAACTTTACGAAGGTGGGATTAAGGTGCCTGAGGGTGTAGTTAAGAAAATTAGGGAGCACATCCCTGCAGAGTTGCTTAAAGAAATTCTCCGAACTGATGGTGAAAGGTTCCTCAAATTTCCTATGCCTCAAGTGATTAAAGAGAATAAGTCTGCATGGAGAACTGATGAAGAATTCGTAAGAGAAATGCTGGCTGGTGTAAATCCTGTCATAATTCGCTGCCTCCAAGAATTCCCACCAGCATCTAAGCTAGATCCTAAAATCTATGGTGATCAAACTAGTACGGTAAGGAAAGAATATATAGAGAGTAACCTGGATGGGCTCACTGTAGATGAGGCAATTAAACAAAAAAAGTTGTTCATATTAGATCACCACGATACACTGATGCCATACTTGAGACGGATAAACTCCACTTCTACAAAGACTTACGCTAGCAGAACAATTCTATTCTTGCAAAATGATGGGACTCTAAAGCCACTGGCCATTGAATTGAGCTTGCCACATCCTGAAAAAGATAGATTCGGTGCCATTAGTGATGTTTACATGCCTGCAGATAAAGGTGTTGAAAATTCCATTTGGCAATTGGCTAAAGCTTATGTAGCGGTAAACGACTCAGGCTATCATCAGCTTATCACCCACTGGTTGCATACTCATGCGGTGATTGAGCCATTCATTATAGCTGCAAATAGACAGCTTAGTGTGCTTCACCCGATTCATAAGCTACTGCACCCTCACTTTCGTGACACCATGAATATAAATGCACTTGCACGACAAATCCTCATCAATGCAGGTGGAATTGTAGAGGCAACACTTTATTCTTCTAAGTATTCCATGGAGATGTCATCTGTGCTCTATAAGAATTGGGTTTTCCCAGAGCAAGCACTTCCTGCAGATCTTGTCAAGAGAGGAATGGCGGTTGAAGATTCAACATCTCCACATGGCCTGCGACTGTTGATTGAGGATTACCCTTTTGCGGTTGATGGGCTAGAGATTTGGTTTGCTATCAAGACATGGGTAAGAGACTATTGCTCTTTTTACTACAAAACTGATGACATAGTGAAGAAAGATGCAGAACTACAATGTTGGTGGAAGGAACTAAGGGAGGAGGGACATGGTGACAAAAAAGATGAGCCTTGGTGGCCAAAGATGCAAACTCGTGAAGAGTTGATTGAAGCTTGCACAATTATTATATGGACAGCTTCAGCTCTACATGCAGCCACCAACTTTGGACAATACCCTTATGCAGGTTACCTCCCAAACCGTCCAACTATAAGTCGGAGATTCATGCCTGAGAAAGGAACACCAGAATATGATGAACTTGTGGCAAATCCTGAAAAGGCTTTTCTGAAAACAATCACAGCTCAGTTGCAGACTCTTATTGGCATTTCACTCATAGAAATATTGTCTAAGCATTCTTCTGATGAGGTCTACCTTGGACAGAGAGACACTCCTAACTGGACATCTGATGTGGATCCATTGGAAGCCTTTGACAAGTTTGGAAAGAAACTGGCAGAAATTGAGCATAAAATCATGACAATGAACGATGATCCCAAACTCAAAAACCGAGTTGGACCAGTTAACATGCCATACACCTTACTTTATCCTACCAGTAAAGCTGGACTCACTGGCATGGGAATTCCTAACAGTGTTGCAATTTGA 2580 0.4159 MFKNIVNALNSDDNKSNHIIGTVILMKKNVLDFNDLSASFLDRLHEFVGKGVSLQLISAVKLDPENGMKGKLGKPAYLEDWITTITPLTAGESAFRVTFDWDEDIGTPGAFLIRNNHHSEFYLRSLTLENVPGQGDIHFICNSWVYPAQKYEKDRIFFSNKTYLLSETPVPLLKFREEELESLRGDGRGNLQEWDRVYDYAYYNDLGDPDKDPQYARPVLGGSSEYPYPRRGRTGRPPAKSDVNNESRLNLAMSLDIYVPRDERFGHLKMSDFLANALKSIVQVIKPELESIFDSTPDEFDSFEDVLKLYEGGIKVPEGVVKKIREHIPAELLKEILRTDGERFLKFPMPQVIKENKSAWRTDEEFVREMLAGVNPVIIRCLQEFPPASKLDPKIYGDQTSTVRKEYIESNLDGLTVDEAIKQKKLFILDHHDTLMPYLRRINSTSTKTYASRTILFLQNDGTLKPLAIELSLPHPEKDRFGAISDVYMPADKGVENSIWQLAKAYVAVNDSGYHQLITHWLHTHAVIEPFIIAANRQLSVLHPIHKLLHPHFRDTMNINALARQILINAGGIVEATLYSSKYSMEMSSVLYKNWVFPEQALPADLVKRGMAVEDSTSPHGLRLLIEDYPFAVDGLEIWFAIKTWVRDYCSFYYKTDDIVKKDAELQCWWKELREEGHGDKKDEPWWPKMQTREELIEACTIIIWTASALHAATNFGQYPYAGYLPNRPTISRRFMPEKGTPEYDELVANPEKAFLKTITAQLQTLIGISLIEILSKHSSDEVYLGQRDTPNWTSDVDPLEAFDKFGKKLAEIEHKIMTMNDDPKLKNRVGPVNMPYTLLYPTSKAGLTGMGIPNSVAI* 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03990 859 PRINTS Plant lipoxygenase signature 227 246 IPR001246 GO:0016491
Rops8g03990 859 PRINTS Plant lipoxygenase signature 450 474 IPR001246 GO:0016491
Rops8g03990 859 PRINTS Plant lipoxygenase signature 129 147 IPR001246 GO:0016491
Rops8g03990 859 PRINTS Plant lipoxygenase signature 297 318 IPR001246 GO:0016491
Rops8g03990 859 PRINTS Plant lipoxygenase signature 384 403 IPR001246 GO:0016491
Rops8g03990 859 PRINTS Plant lipoxygenase signature 772 786 IPR001246 GO:0016491
Rops8g03990 859 PRINTS Plant lipoxygenase signature 155 176 IPR001246 GO:0016491
Rops8g03990 859 PRINTS Plant lipoxygenase signature 194 210 IPR001246 GO:0016491
Rops8g03990 859 PRINTS Plant lipoxygenase signature 345 361 IPR001246 GO:0016491
Rops8g03990 859 ProSitePatterns Lipoxygenases iron-binding region signature 1. 515 529 IPR020833 GO:0016702|GO:0046872
Rops8g03990 859 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 162 859 IPR013819 GO:0016702|GO:0046872
Rops8g03990 859 FunFam Lipoxygenase 359 492 - -
Rops8g03990 859 ProSitePatterns Lipoxygenases iron-binding region signature 2. 542 552 IPR020834 GO:0016702|GO:0046872
Rops8g03990 859 SMART LH2_4 17 160 IPR001024 GO:0005515
Rops8g03990 859 FunFam Lipoxygenase 164 268 - -
Rops8g03990 859 SUPERFAMILY Lipoxigenase 165 859 IPR036226 -
Rops8g03990 859 FunFam Lipoxygenase 269 358 - -
Rops8g03990 859 Gene3D - 164 268 - -
Rops8g03990 859 Pfam Lipoxygenase 172 842 IPR013819 GO:0016702|GO:0046872
Rops8g03990 859 PANTHER LIPOXYGENASE 21 859 IPR000907 GO:0016702|GO:0034440|GO:0046872
Rops8g03990 859 Gene3D - 493 858 - -
Rops8g03990 859 Gene3D PLAT/LH2 domain 11 163 - -
Rops8g03990 859 FunFam Lipoxygenase 10 163 - -
Rops8g03990 859 Gene3D - 359 492 - -
Rops8g03990 859 CDD PLAT_LH2 21 160 IPR042057 -
Rops8g03990 859 ProSiteProfiles PLAT domain profile. 29 159 IPR001024 GO:0005515
Rops8g03990 859 FunFam Lipoxygenase 494 858 - -
Rops8g03990 859 PRINTS Lipoxygenase signature 515 532 IPR013819 GO:0016702|GO:0046872
Rops8g03990 859 PRINTS Lipoxygenase signature 535 555 IPR013819 GO:0016702|GO:0046872
Rops8g03990 859 PRINTS Lipoxygenase signature 497 514 IPR013819 GO:0016702|GO:0046872
Rops8g03990 859 Gene3D - 269 358 IPR027433 -
Rops8g03990 859 Pfam PLAT/LH2 domain 60 158 IPR001024 GO:0005515
Rops8g03990 859 MobiDBLite consensus disorder prediction 209 244 - -
Rops8g03990 859 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 18 163 IPR036392 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03990 Rops-Chr8 81262097 81269928 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03990 1 859 Acyl Lipid Metabolism Gene Families AT1G55020 69.873 0.0 1278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03990 K15718 - gmx:100815550 1505.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03990 8 81262097 81269928 Rops8g03990 8 81262097 81269928 ECH
Rops8g03990 8 81262097 81269928 Rops6g01854 6 36324086 36339176 PCT