Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03987 ATGTCAGATTCACAATCGAATTCAGAGATTTTCAGTGTTCGAATTGTCTCCATCGACTATTACATGGCACCGCCGATTCCAGGCGTGGATATCTGTTACAGCAGCTTCCATGGTGGAAAAGTGAGCGAAGTTCCTGTAATAAGAGTGTATGGTTCGACTCCTGCTGGTCAGAAGACATGCTTGCATATACATGGAGCTTTACCTTATATGTATGTGTCTTGTTCGGATATACCACTTCAACCAGACCAAGAAGGTGATGCATATACCTACAAGGTAGCTGCTGCTCTTGAGAAAGCATTGAAGCTTAAAGGCAGCACTGGTTCAGTGAGACAACATGTACATGGATGCAGCCTTGTACGAGCAAGGAAATTTTATGGCTATCGTTCATTTGAAGAGTTATTCGTAAAGATATACCTATATTATCCTCAAGATGTCTCCCGTGCTGCTAATCTTCTCTTGGCCGGTGCTGTTCTTGATAAAAGTTTACAACCTCATGAATCACATATTCCCTTTATTCTTCAGTTTATGGTTGATTACAACTTGTATGGCATGGGTCTTTTGCACCTGTCAAAGATGAGGTTCCGCCATCCCATACCAGACTCTTCTCACAAGAAATTGCATGTTAATATCCAGCATAGAAAGGCAGATCCGGATGCTGATGCATGTTTAGAGTCAAAATTGTGGACGCCTTCCATGATTCCACCTGATTGGAAGTGGTCACCCCCTTGTGAATTTGGTGATTCATCAAATGATAAGGCTAACTGTCCTAAACGTCAAAGCATCTGTGAGCTTGAAGGAGATACTTCTGTAAATGCAGAGATTCTTAATCAGCAGTTTAAAATGTATTCATCTTTATCACAAACATGCTCAGATGTCAACATGGTTCAGTCACTTGTGCCAATATGGGAGGAACAGCAGAAAAGAACTGGGATTCATGAGGCTACTATGCCTTCTGATCCTGGTAAACCACTTCCTGAAGATGCCATAAAACTTCTCTCTGTTGGTCTTGACTTTGAGAAAAAACTTATTGAATTGTGCAGTGAAGCTGAAACCTCTTTATTTTGTACTCCTTCTCAGAAGGAATTTAGAGAAACAGACACAATAGGCTCAGCATCACCACCAGCTTCATTGTGTGAAAATGCCAAATTGCTTGAGGAAGGGACTGACTCAAGCCTCAAATTGTTGACTATTGATGAAATGCAATCTTCTGAAAAGATTGGAATGTTGGACATAAAGGCTGCTGATAAGGAAGCACAAAATCTTCTTAAGTGGCTTGCAACTTCTCAAGCTGCAGAGGATATAAACTCTGATGATGAACTGTTTTGTGAAACGATCTTGAGTCCCTTGTTACCTGCCGCAACAATTGATAAGGTGCTGGAGAAAGCTAACATGGCTTATGAGAGTGAGTCCCAAAAGGAGTGTCAGGATATTCTAGATTCAATTGATGATCTGCTTGAGTTGGAGCCACCAAAGGAAAAGCCTTCTTGTTCCTTTGATCACAATCATCCTGTTGATGCTTCATCAAATAGTATGATACCCCAAGTTGATGGTTCAAATGATGATGAATTCTCAAGTCCATGTGCTAGTTTGGCTGGAACCTCATCTGCAGTAGAGATAAACAGTGAATACAAAAGGACTTCCGAGTACCATGTACCGCACAATACTGACAGAAGTACAGTTAGTACAGATAAAAGGAACAAACTGTGGGGGTCTTTACCTTTTTCCATGACTGGTAAGGTTAATAATGATGGAGAACATTCTACTTTACATGTGACTCATCCATTTGAAAGCGAAACCAGAGATTCCACTCATTCAGATTACTTAACCAGAAACGAGGTCAGAAATAATGCTTGTATCAAAGAAAATGTGGGCGAAGGTGCTTCAGATTCAAAAGAAGTAAAGAGATTGGTTAGCTGCTCGGTGCGGGACTTGATGAGGCGAAAACGATCCTACCGAGTTGAACATGCTGAATGCGAATCTCAAACTACTAAAAAGCTTCTTTTAGACAGGCATGAGGGACGCCCTTGGCAAAAACAACTGGATTTGAAGACAATGCAAACCAATGAAGAAGAAAAAACAGAACTCCAAAAAATTTGTGATCTTAAAGTGAGCAGTCATGATAATTTAGTGTGTGGGAAACTGTCACTTCCAGCTGGCAGTGACAGTTTTTTACAGGCTAGTATGGCAAAAGTTGAATGTTTTGGTCAACATGAAATGGAGTGTCTAGAAGAAGCAAGTACGGTGTTGAGGAACTCCGCAGATGGATTAATGAGTGGAGGACAAGGCCTCAATAAGCTTGAAAATTTATGTTTTATTGATTCCATAAACCAATCTGTGGCTTGCAGGGATAAAAACCGTAAGGTTGGAACAGCTTATGCAAAACCTGTAGCTTCTGATGCCTATACCCCAAATCCTTCTTTAGAAACTCAGTTGAGAACAGATGCTGCTGATCATAAAGTCAACGCTCATGAGAGGTGTCAGCAAACTGATTCTGCTGCTTCAAGTAGTGCACAGTGCTCATCCATTGATCATAAAGTGTCAGGCAAACATAATTGCATGGATCAAAGTTCTAGTGTATGCTTTGTGCAAGATGATCAGATGAAGTTTTATGAGCATGCTGTGGGCAAAAGTGCTGCAAGTGACACGCAAGTATTGCTAAGTGAAAAAGTTGACGATCAAAAGATGGGTAAAAATTTGTTGTCTGAGACTATTGGCTCAGAATCCATTGTTGATGACCTGAAGGGTAATCATGTGAAGTTAACTGAAATAACCATAGGCAAGAACCCTTTGGCTGACAAGAATCTTGAAAGTAATTCGTCCTTGCCAACTGTTCCTAATACCCATTTACATTTGGATGAGGACAGCTGTGATGAAATGCCAGGGAATGCTCTGGATGTTATTCGAAGGGATTCCCAGAAAGAGATGGAATCTTGGAACAAGTGTGTTACAATTAAAACCCACAGATCGAATGGGACAAAGGGTGTTGCCACTCACTATAAAAATGATGGCTCTCACCTATACCTATTAAAACCTAATATTTTGCCTCCTTCTGTAGCTTCTGTGCGGAGATGGCTATTTTGTGAGAAGAGAGAACCTGATGCAGAGGATAAGGATGTACCGAAATGTGCTTCTGAACCTCCGCTTAGCCCTAAGCCGTATCAAGACGCTGGTGCAGAAAAGATGCCTCCATGCATTAGCGAAGGTCAAAAAGAAAGAGCTAAAGCAGGCCTAGATGGCTTACAAGATATTTCTCAGATATCAGGTCCTGATAGGAAATCAAGTTCTACCCCTCTTAGTCAAATTGGATTTCAAGACCCTGCAAGTGTTGGCTGTGGACAGCAATTGACATTACTTAGTATAGAGGCTCTTGCAGAATCTAGAGGAGACCTTTTACCTGATCCTCGATTTGATGGCATCAACATTGTGGCTCTTGGTTTTCAGAATGATAGTGATTCTAATATTGAAGTTTTTGTTCTTTTGCAAAGTAAATCTGTACCTTGTCAGAGAAATTTTGATGGTCTATCAGGCTGCAAAGTATTTGTCTTCACTGATGAGAAGCACTTGTTTAAAGAATTTATGAAGATTGTGTCTTCATCCGACCCAGATATTTTGATGGGTTGGGATGTTCAAGGGAGTTCTCTTGGTTATCTAGCAGAAAGGGCTTCACATCTTGGTTTAGGATTACTTGATGGTTTGTCTCGCACTCCATCAGATTCTTGGATTGCTTCTGAAGACTCCAAAACGTCTGAAAAAGGTATCTTGGAACTGGACATCCATGATACCCCTAGTCTAGATTGTTGTATGCAAGAAAGTTCAATAATTGAGGATGAATGGGGACGAACACATGCTAGTGGAGTTCATGTAGGTGGCAGAATTGTCCTTAACATATGGCGATTGATCCGTGGAGAAGTTAAGCTGAATTTATATTCAGTTGAAGCTGTAGCTGAAGCTGTATTGAGGCGGAAAATTCCTTTAATTCACCACAAGGTGCTGACAAAATGGTTTTCAAGTGGTCCTGGACGAGCTAGATATCAGTGCATCAAATATGTTGTAGACAGAGCAAAGCTGAACCTTGAGATCTTAAACCAACTTGATATGGTGAATCGAACATCAGAACTTGCTCGTGTCTTTGGCATAGACTTTTTTTCAGTTCTCTCTCGAGGCTCACAATACCGTGTTGAATCCATGTTTTTGAGGTTGGCCCATACACAAAACTATCTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCTATGGAATGTCTGCCACTAGTAATGGAACCGGAGTCAAGATTTTATTCAGATCCTGTTGTTGTACTTGATTTCCAGTCTTTATATCCATCAATGATAATTGCATACAACCTTTGCTTCTGTACTTGTCTTGGCAAAGTTGTGGCATCGAATGCTAATATACTCGGGGTTAGTTCATTTTCACCAGAGCAACATGTTCTGAAGGATTTAAAAGATCAAATCTTGCTCACTCCAAATGGTGTTATGTTTGTACCGTCCAAGGTTCGAAGAGGTGTACTGCCCCGCTTATTGGAAGAAATCTTATCAACTAGAATAATGGTAAAACAAGCAATGAAAAAGTTGGCTCCTTCAGAGCAAGTTCTTCAGCGGATATTTAATGCAAGACAGCTTGCTTTGAAGCTCATATCAAATGTAACATATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAACTTGCAGACAGTATCGTTCAATGTGGCCGTAGCACACTGGAAAAGGCTATATCATTTGTAAATCTACATGAAACGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAAAGGACGCACTATCAAAGAGTCCTTCCAAATTGGTAGTGAGATTGCTTCTACTATCACTGCCATGAATCCTAATCCTGTCACCCTGAAGATGGAGAAAGTTTATCACCCATGTTTCCTCCTTACTAAAAAGCGATATGTTGGCTACAGTTATGAAAGCCCTGATCAAATTGAACCTGTTTTCGATGCTAAAGGTATTGAGACAGTACGCCGAGACACATGTGGTGCAGTTGCAAAGATAATGGAGCAGTCTTTGAGACTCTTTTTTGAGCATCAGGATTTATTGGAGGTGAAGACTTATTTGCAATGTCAGTGGAAGAGGATTGTTTCAGGCAGATTCTCCCTTAAAGATTTTATCTTTGCAAAGGAAGTTCGCTTGGGTACCTACAGCGCAAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCAATGAGGGTTGATCCTAGGGCAGAACCACGATATGCTGAGAGAATACCTTATGTGGTAATCCATGGAGAGCCTGGAGCCCGCCTGGTTGATATGGTTGTGGATCCATTGGAAGTTTTGGCAATTGATTCCCCATATAGAATAAATGATTTATATTACATTACTAAACAAATAATACCAGCTTTACAGCGGGTGTTTGGGCTTGTTGGTGCTGACCTAAACCAGTGGTTTGCAGAGATGCCCCGCCCTATAAGGGAAGCTTCTATAAAACATACATTCACTCCAAATTTCCATCGAACCAGAATTGATTATTACTATCTCTCAAAACATTGTGTACTGTGTGGTGGGTTGGTCCAGGCATCAGCTCGTTTATGTGGTCAATGTTCTGAAAATGAAGTAGCTGCTGCGACAGCGGTGATCAGTAAGACTTCGAAGTTAGAGCAAGAGATGCAAAATCTTGTTGCCATATGTCACCATTGTGGAGGCGGGGATAGGCTTCTCGAAAGTGGTGTGAAGTGCACGTCCATTTCATGCTTGGTGTTCTATGAGAGGCGGAAAGTTCAGAAAGAACTACTAGCTGCCACCCATGTTGCCGCGGGTAAAGGCTTCTATCCAAGATGCACGGTGGAATGGTTTTGA 5925 0.4125 MSDSQSNSEIFSVRIVSIDYYMAPPIPGVDICYSSFHGGKVSEVPVIRVYGSTPAGQKTCLHIHGALPYMYVSCSDIPLQPDQEGDAYTYKVAAALEKALKLKGSTGSVRQHVHGCSLVRARKFYGYRSFEELFVKIYLYYPQDVSRAANLLLAGAVLDKSLQPHESHIPFILQFMVDYNLYGMGLLHLSKMRFRHPIPDSSHKKLHVNIQHRKADPDADACLESKLWTPSMIPPDWKWSPPCEFGDSSNDKANCPKRQSICELEGDTSVNAEILNQQFKMYSSLSQTCSDVNMVQSLVPIWEEQQKRTGIHEATMPSDPGKPLPEDAIKLLSVGLDFEKKLIELCSEAETSLFCTPSQKEFRETDTIGSASPPASLCENAKLLEEGTDSSLKLLTIDEMQSSEKIGMLDIKAADKEAQNLLKWLATSQAAEDINSDDELFCETILSPLLPAATIDKVLEKANMAYESESQKECQDILDSIDDLLELEPPKEKPSCSFDHNHPVDASSNSMIPQVDGSNDDEFSSPCASLAGTSSAVEINSEYKRTSEYHVPHNTDRSTVSTDKRNKLWGSLPFSMTGKVNNDGEHSTLHVTHPFESETRDSTHSDYLTRNEVRNNACIKENVGEGASDSKEVKRLVSCSVRDLMRRKRSYRVEHAECESQTTKKLLLDRHEGRPWQKQLDLKTMQTNEEEKTELQKICDLKVSSHDNLVCGKLSLPAGSDSFLQASMAKVECFGQHEMECLEEASTVLRNSADGLMSGGQGLNKLENLCFIDSINQSVACRDKNRKVGTAYAKPVASDAYTPNPSLETQLRTDAADHKVNAHERCQQTDSAASSSAQCSSIDHKVSGKHNCMDQSSSVCFVQDDQMKFYEHAVGKSAASDTQVLLSEKVDDQKMGKNLLSETIGSESIVDDLKGNHVKLTEITIGKNPLADKNLESNSSLPTVPNTHLHLDEDSCDEMPGNALDVIRRDSQKEMESWNKCVTIKTHRSNGTKGVATHYKNDGSHLYLLKPNILPPSVASVRRWLFCEKREPDAEDKDVPKCASEPPLSPKPYQDAGAEKMPPCISEGQKERAKAGLDGLQDISQISGPDRKSSSTPLSQIGFQDPASVGCGQQLTLLSIEALAESRGDLLPDPRFDGINIVALGFQNDSDSNIEVFVLLQSKSVPCQRNFDGLSGCKVFVFTDEKHLFKEFMKIVSSSDPDILMGWDVQGSSLGYLAERASHLGLGLLDGLSRTPSDSWIASEDSKTSEKGILELDIHDTPSLDCCMQESSIIEDEWGRTHASGVHVGGRIVLNIWRLIRGEVKLNLYSVEAVAEAVLRRKIPLIHHKVLTKWFSSGPGRARYQCIKYVVDRAKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESRFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVASNANILGVSSFSPEQHVLKDLKDQILLTPNGVMFVPSKVRRGVLPRLLEEILSTRIMVKQAMKKLAPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNLHETWNAKVIYGDTDSMFVLLKGRTIKESFQIGSEIASTITAMNPNPVTLKMEKVYHPCFLLTKKRYVGYSYESPDQIEPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFEHQDLLEVKTYLQCQWKRIVSGRFSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRVDPRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPYRINDLYYITKQIIPALQRVFGLVGADLNQWFAEMPRPIREASIKHTFTPNFHRTRIDYYYLSKHCVLCGGLVQASARLCGQCSENEVAAATAVISKTSKLEQEMQNLVAICHHCGGGDRLLESGVKCTSISCLVFYERRKVQKELLAATHVAAGKGFYPRCTVEWF* 1975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03987 1974 Gene3D - 1682 1846 IPR042087 -
Rops8g03987 1974 FunFam DNA polymerase 1682 1850 - -
Rops8g03987 1974 Gene3D Palm domain of DNA polymerase 1426 1671 IPR023211 -
Rops8g03987 1974 FunFam DNA polymerase zeta 1507 1566 - -
Rops8g03987 1974 Gene3D DNA Polymerase, chain B, domain 1 29 196 - -
Rops8g03987 1974 Pfam DNA polymerase family B 1381 1828 IPR006134 GO:0000166|GO:0003677
Rops8g03987 1974 PRINTS DNA-directed DNA-polymerase family B signature 1605 1613 IPR006172 GO:0000166|GO:0003676|GO:0003887
Rops8g03987 1974 PRINTS DNA-directed DNA-polymerase family B signature 1440 1453 IPR006172 GO:0000166|GO:0003676|GO:0003887
Rops8g03987 1974 PRINTS DNA-directed DNA-polymerase family B signature 1549 1561 IPR006172 GO:0000166|GO:0003676|GO:0003887
Rops8g03987 1974 SMART polmehr3 1113 1619 IPR006172 GO:0000166|GO:0003676|GO:0003887
Rops8g03987 1974 MobiDBLite consensus disorder prediction 1035 1063 - -
Rops8g03987 1974 SUPERFAMILY Ribonuclease H-like 27 1386 IPR012337 -
Rops8g03987 1974 Pfam DNA polymerase family B, exonuclease domain 55 213 IPR006133 -
Rops8g03987 1974 Pfam DNA polymerase family B, exonuclease domain 1131 1248 IPR006133 -
Rops8g03987 1974 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 5 1967 IPR030559 GO:0006281|GO:0016035|GO:0019985
Rops8g03987 1974 Gene3D Helix hairpin bin 1506 1566 - -
Rops8g03987 1974 SUPERFAMILY DNA/RNA polymerases 1427 1840 IPR043502 -
Rops8g03987 1974 CDD DNA_polB_zeta_exo 1112 1362 - -
Rops8g03987 1974 CDD POLBc_zeta 1388 1836 - -
Rops8g03987 1974 ProSitePatterns DNA polymerase family B signature. 1607 1615 IPR017964 GO:0000166|GO:0003676
Rops8g03987 1974 FunFam DNA polymerase 1122 1423 - -
Rops8g03987 1974 Gene3D - 1140 1423 IPR036397 GO:0003676
Rops8g03987 1974 Pfam C4-type zinc-finger of DNA polymerase delta 1873 1946 IPR025687 -
Rops8g03987 1974 FunFam DNA polymerase 30 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03987 Rops-Chr8 81200513 81222399 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03987 1147 1956 Core DNA Replication Machinery Family AT5G63960 28.929 9.19e-86 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03987 K02350 - gmx:100777934 3107.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03987 8 81200513 81222399 Rops8g03987 8 81200513 81222399 ECH