Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03983 ATGGGTTGCCAAGGCAACACGAATATCATTGGCCAACCAAAACCATCACTTTATATTTGTTCAAGTTTCGCGGCAACTCATTTCTCACCTTTTCTCTCTAAACCCGATAACTATTCTCTCCTCTTATCTCATTCATGTTTCTGCGCGAATCCGATAAACCCTACCAACGATAAAAGATTTATGGCACCACCAAGGAAACCTAGAAGTATGAATAAGCGATTTTCAGGTGTAAATGAGGTCTCTCCTGAGAAAGATGAAGTTAACTCAAATAAAAAAAAGCAACGGAAGAAAAAGTTATCTAATAAATTGGGATCTCAGTGGAACAAGGAGGAACTGAAGCGATTTTATGAAGCGTACAGGAAGCATGGGAAAGACTGGAAGAAGGTGGCTGCAGCTGTACGTAACAGATCTGTTGAAATGGTGGAGGCTCTTTACAATATGAATCGGGCATACCTATCTCTACCAGAGGGAACAGCTTCTATTGTTGGCCTAATTGCAATGATGACAGATCACTATAATGTGCTGGAAGAGAGTGATAGTGAAAGGGAGAGCAATGATGCACCAGGATCTCAAAAATCTGTGAAACGAAAGCATGGAAAAATTCAGCTTACTGTCTCGAAAGATTCTGTCCAGTCTCCATCAATTGCTTCAAATGATGGTTGCCTCTCGCTATTGAAGAGAAGACGCATTGATGGCAGCCAACCTCGAGCAGTTGGGAAAAGGACACCTCGCATCCCAGTTAACTACTCTTATAAGAAAAATGATTGGGAAAATTATGTTTTGCCTAATAAAAGAAGGCTGAAGTTAGCTTTTGATGCTAATGATGATGAAGTTGCCCATGTCGCAGCTCTGGCATTAACTGAGGCAGCACAAAAAGGTGGCTCTCCCCAAGTATCTCAAATGCCATACAAAAGAGCAGACCAGAAGTCCTCTGCTGTTCAGAGCTGGGAAAGAATGCACCAAGTGTCTGAGACAGTTCCAGGCAAGTTTTATGATACTCATGTTAATGAAGAGTGCTTGGAAGGTAGTATAGAAAGCAGGGGAGTTGAAAATGGTGAATATATTAGAGATGCTAGTTCCTTGATGAATATGGAAGGCATGGGCACTGTTGAAGTTCATCAGAAAGGGAAAAACATTTACGGAAAGAAGGAAAAGGGGGAAACTGTTGAAAACCATCTTCTTGATGATGGTGGAGAAGCATGTAGTGGCACTGAAGAAGGACTTAATAGTTTTAAGGAAAAGGTTGATATCGAGTTTACTAATGCAAAACTGGAACAATTCTCTCTAAGATGTCAGAGGAAAAGAAGCAAGAAACTTTTCTTTGGAGATGAAAGCTCTGCCTTGGATGCTTTGCAAACTTTGGCCGATCTGTCTCTAATGATACCGGCTTCTACAATGGAATCTGAATCATCTGTCCAATTGAAGGAAGAAAGAATTACTGTTGATCATGATGAAAAGTATGCTTTACCTGAAGGCTCATCGTCAATCCAAAACAGAGATAAAATTAAACTTTCCCCACATTTGAAACAAAATATTGTTCATGCAGTCCATGGAGTTGAGGTTTCAACCTCCAAAAAATCTAAACTTGGAAGGGAATCAGTAAATGATACTAATGCACTTGTTGAATCTAAAGAGCGGCTTTCCTCTGCTGATAAAACGTGGAAAAGAAAGCGCAAATCCATGGCTTCAAAGGTAGCAAATGCAAAGCTTGATTCATATCCAAGTGAACCATTGAATAACGAGGCTGTAGATGAAGAGAATAAACCAGTGATTATAGGAAAACACATTGATCAGATTTTCACTCTAGCAAAACAATTGAAGTCAGTCAGTTCATCAGAAAGTTCCCCATGTAGTGACCAGAAAGATTTGAGAGTACTAACTGCAGAAATTCCACTTGTGAATAAAGTTTGTTTATCTACTAAACAAAGAAATAGACATAAGATGCACAGAGCATTCATGCCTAAAGAGAAATCTCCTGAGAACATATTGAAAAGTCAACCTAATAAATATCCGACCCCTGTCCAAGATAGGGCATTATTTTTGAAGGAAAAGCTTTCTGGTTGCTTGTCATCTTATATGGTTCGCAGATGGTGTATGTTTGAATGGTTTTATGGTGCAATTGATTACCCATGGTTTTCCAAAAGGGAATTCATGGAATACTTAAATCATGTTGGTCTAGGGAATATCCCAAGGCTAACTCATGTGGAGTGGAGTGTCATAAAAAGTTCCCTTGGCAAACCTCGCAGGTTTTCTGAACAATTTCTTCGTGAAGAAAGACAAAAACTGGAACAGTATCGTGAATCTGTTAGGAAACATTACACTGAACTGCGGACTGGTATCAAGGATGGACTTCCAACAGATTTAGCTAAACCTTTATATGTTGGACAACGAGTAATTGCTCTTCACTCAAAAACAAGAGAGATTCATGATGGAAGTGTGCTTACAGTTGACCATGACAAGTGCAGGGTTCAGTTTGACCGTCCTGAATTGGGTGTTGAATTTGTCAAGGACATTGATTGCATGCCTTTGAATCCATTGGATAATATGCCAGAAGCTCTGAGGAGGCAGATTGGTGCTGCCAAAGTACCTTGTATGAGTAAAGAACCGCAAATGAAAGGAAATTCAAGTTTTGGGGGGGGTGTGACGTGTGCTTCAAATGGACCTGTGGAGAAGGCACCCTTCTCTTCAAGTACTCTGGTTAAGCAGGAAAAGGGGGATGTTAACCCTTCCGTTGCCCAAACTAAGGCTGCTATTATTGATCACCTCTATACACAACAAGCAGCATGTACTCAACCATGTACGGTGACTAATGATCAAGCTAAGGAAGCTGACATACATGCCCTTTCTGAGCTGACACGTGCTCTAGATAAAAAGGAGAGATTGTTGATGGAACTTAAAATTGCAAATAGTGACATAATGGAAAACAAAAATGACTCAGACTACTTTAAAGATTCAGAGGCTTTCAAGAAGCATTATGCCATGGTACTTGTACAGCTAAAGGAAGCCAGTGGACAGGTTTCTAATGCTCTGCTTCATTTGACGCAACGTAATACATACTCAGGAAACTCTCTGCCACCATGGATGAAGCCCCAAGCAAGTTTTAATGTTCATGATGGCCTTCCCTGTACGTTGGATAGTTCTCTAACTCGAGAGTTAGGGTCAACTGTCATTGAAATAATTAAAGGATCCAGGCTTAAAGCACATGCCATGGTGGATGCTGCATCTCAGGCATTGTCTTCAACGAAGGAAGGTGAAGATGCTTTCGTGAGGATTGGGCAGGTCTTGGATTGTATTGATCATCAGCAGTCGGTCACCAACTCTGGGTTACCTGTGATCAAGTCCCAAGAGCAAGTGAAAGGCAGTTTTGATTACCATAATAGGTCAATGTGCCATTCATCTGAGCCTTTACTCAACGATGCGTCTGGTCCAAAATTACATCGCGATTCTGACAAAGTTGATACTCGAATTCCTTCAGACCTCATCACTTCCTGTGTTGCTACATTGATCATGATACAGACTTGTACTGAACGACAATATCCTCCAGCTGATGTGGCTCAGATATTAGATTCTGCTGTTACCAGCCTGCATCCATGCAGTCCACGAAATCTTCCTATTTACAGAGAAATTCAAACGTGCATGGGAAGAATTAAGACCCAGATTTTAGCCCTCATCCCTACTTGA 3681 0.408 MGCQGNTNIIGQPKPSLYICSSFAATHFSPFLSKPDNYSLLLSHSCFCANPINPTNDKRFMAPPRKPRSMNKRFSGVNEVSPEKDEVNSNKKKQRKKKLSNKLGSQWNKEELKRFYEAYRKHGKDWKKVAAAVRNRSVEMVEALYNMNRAYLSLPEGTASIVGLIAMMTDHYNVLEESDSERESNDAPGSQKSVKRKHGKIQLTVSKDSVQSPSIASNDGCLSLLKRRRIDGSQPRAVGKRTPRIPVNYSYKKNDWENYVLPNKRRLKLAFDANDDEVAHVAALALTEAAQKGGSPQVSQMPYKRADQKSSAVQSWERMHQVSETVPGKFYDTHVNEECLEGSIESRGVENGEYIRDASSLMNMEGMGTVEVHQKGKNIYGKKEKGETVENHLLDDGGEACSGTEEGLNSFKEKVDIEFTNAKLEQFSLRCQRKRSKKLFFGDESSALDALQTLADLSLMIPASTMESESSVQLKEERITVDHDEKYALPEGSSSIQNRDKIKLSPHLKQNIVHAVHGVEVSTSKKSKLGRESVNDTNALVESKERLSSADKTWKRKRKSMASKVANAKLDSYPSEPLNNEAVDEENKPVIIGKHIDQIFTLAKQLKSVSSSESSPCSDQKDLRVLTAEIPLVNKVCLSTKQRNRHKMHRAFMPKEKSPENILKSQPNKYPTPVQDRALFLKEKLSGCLSSYMVRRWCMFEWFYGAIDYPWFSKREFMEYLNHVGLGNIPRLTHVEWSVIKSSLGKPRRFSEQFLREERQKLEQYRESVRKHYTELRTGIKDGLPTDLAKPLYVGQRVIALHSKTREIHDGSVLTVDHDKCRVQFDRPELGVEFVKDIDCMPLNPLDNMPEALRRQIGAAKVPCMSKEPQMKGNSSFGGGVTCASNGPVEKAPFSSSTLVKQEKGDVNPSVAQTKAAIIDHLYTQQAACTQPCTVTNDQAKEADIHALSELTRALDKKERLLMELKIANSDIMENKNDSDYFKDSEAFKKHYAMVLVQLKEASGQVSNALLHLTQRNTYSGNSLPPWMKPQASFNVHDGLPCTLDSSLTRELGSTVIEIIKGSRLKAHAMVDAASQALSSTKEGEDAFVRIGQVLDCIDHQQSVTNSGLPVIKSQEQVKGSFDYHNRSMCHSSEPLLNDASGPKLHRDSDKVDTRIPSDLITSCVATLIMIQTCTERQYPPADVAQILDSAVTSLHPCSPRNLPIYREIQTCMGRIKTQILALIPT* 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03983 1226 Pfam Myb-like DNA-binding domain 105 142 IPR001005 -
Rops8g03983 1226 CDD SANT 107 141 IPR001005 -
Rops8g03983 1226 PANTHER LIN-9 61 1226 IPR010561 GO:0006351|GO:0017053
Rops8g03983 1226 MobiDBLite consensus disorder prediction 176 214 - -
Rops8g03983 1226 Gene3D - 56 159 - -
Rops8g03983 1226 ProSiteProfiles SANT domain profile. 102 139 IPR017884 -
Rops8g03983 1226 SMART sant 103 151 IPR001005 -
Rops8g03983 1226 MobiDBLite consensus disorder prediction 78 92 - -
Rops8g03983 1226 MobiDBLite consensus disorder prediction 58 103 - -
Rops8g03983 1226 Coils Coil 755 775 - -
Rops8g03983 1226 SMART DIRP_2 703 804 IPR033471 -
Rops8g03983 1226 MobiDBLite consensus disorder prediction 176 193 - -
Rops8g03983 1226 Coils Coil 948 975 - -
Rops8g03983 1226 Pfam DIRP 702 802 IPR033471 -
Rops8g03983 1226 SUPERFAMILY Homeodomain-like 101 150 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03983 Rops-Chr8 81172737 81188709 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops8g03983 DIRP 7.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03983 - - gmx:100816217 1548.87