Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03982 ATGTTTGATTCAGTAGCGGGAACGGAATATCAGGGTACTGGAGTTTCAGGACCCATTTTGATTCCAAAACGGTTTGTGTGGCCTTATGGGGGAAGAAGGGTGTTTCTAAGTGGTTCTTTCACCAGATGGTCTGAACATATACCTATGTCTCCTATGGAGGGATGCCCTGCAGTGTTTCAGGTTATTTGCAGCTTAACGCCGGGATGTCATCAGTACAAATTTAACGTGGATGGTGAGTGGCGGCACGATGAGCAGCAGCCCTTTGTAAGTGGGAACTATGGAGTAGTGAATACTATTTACTTAGTGAGCGAACCAGATATTTTACCTGCCATCTCAAGTGCTGAAACACTCAGTAGATCCCACATGGAGGTTGATAATGATGTCTTTGGGCATGCGGAAGTTAATCCAAGGACGCCAGAATCTGATCTGGAGGTTTCTCGCCACCGAATATCTGTATTCTTGTCTACACATACTGCGTATGATTTGCTTCCAGAGTCAGGGAAGGTCACTGCCTTGGATATAAATTTACCAGTTAAGCAAGCATTCCATGTTCTGTATGAACAGGGCGTATCTATGGCTCCTCTATGGGATTTTTGCAAGAGTCAATTTATTGGAGTGCTTAGTGCTATGGACTTCATTCTAATATTGAAAGAGCTGGGGAATCATGGATCAAATTTAACTGAAGAACAACTTGAGACTCATACTATAGCAGCCTGGAAAGAGGGAAAATTACAGCTACACAGGACACTCGATAGCAATGGGGGATCATATCCTTGGCGTTTTGTTCATGCTGGGCCCCATGAATGTCTAAAAGATGTGGCTTTGAAGGTTTTGCAAAACAAGGTGTCGACAGTTCCTATCATCCATTCTTCTTCAGAGCATGGTTCATTTCCTCAACTGCTACATCTTGCTTCCCTATCAGGAATACTAAAATGTATATGCAGGCATTTTAAGCACTGCTCCAGTTCTTTGCCCATTCTTCAACTTCCGGTTGGTTCAATACCTTTGGGCACATGGGTAGCTAAAGTTGGGGAACCAAATGGACTTGCAATGCTAAGGCCAAATGCCTCTCTTGGTGCTGCTCTTTCGATGTTTGTTGAAGCTGGAGTTAGCTCAATACCGATTGTGGATGATAATGATTCATTGCTTGACATATATTCAAGAAGTGACATTACTTCATTGGCTAAAGATAAAGCTTATGCTCGGATATCTCTTGATGAAATTAGTATCCATCAGGCATTGCTTTTGGGACAAGATGCAAATTCTCCTCATGGGCTTTACAATGGCCACAGATTTCATATGTGTTTGAGATCTGATTTGTTGCACAAAGTGATGGAGCGGTTGGCTAATCCTGGGGTTAGGAGACTTGTGATTGTGGAGGCTGGCAGCAAGCGCGTGGAAGGGATTATTTCCTTAAGTGACGTGTTCAAATTCTTGTTAGGCTAG 1446 0.4322 MFDSVAGTEYQGTGVSGPILIPKRFVWPYGGRRVFLSGSFTRWSEHIPMSPMEGCPAVFQVICSLTPGCHQYKFNVDGEWRHDEQQPFVSGNYGVVNTIYLVSEPDILPAISSAETLSRSHMEVDNDVFGHAEVNPRTPESDLEVSRHRISVFLSTHTAYDLLPESGKVTALDINLPVKQAFHVLYEQGVSMAPLWDFCKSQFIGVLSAMDFILILKELGNHGSNLTEEQLETHTIAAWKEGKLQLHRTLDSNGGSYPWRFVHAGPHECLKDVALKVLQNKVSTVPIIHSSSEHGSFPQLLHLASLSGILKCICRHFKHCSSSLPILQLPVGSIPLGTWVAKVGEPNGLAMLRPNASLGAALSMFVEAGVSSIPIVDDNDSLLDIYSRSDITSLAKDKAYARISLDEISIHQALLLGQDANSPHGLYNGHRFHMCLRSDLLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFKFLLG* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03982 481 SUPERFAMILY CBS-domain pair 148 319 IPR046342 -
Rops8g03982 481 FunFam Sucrose nonfermenting 4-like protein 18 102 - -
Rops8g03982 481 SUPERFAMILY E set domains 21 103 IPR014756 -
Rops8g03982 481 Gene3D Immunoglobulins 21 113 IPR013783 -
Rops8g03982 481 Pfam CBS domain 350 394 IPR000644 -
Rops8g03982 481 Pfam CBS domain 431 480 IPR000644 -
Rops8g03982 481 SMART cbs_1 348 396 IPR000644 -
Rops8g03982 481 SMART cbs_1 431 480 IPR000644 -
Rops8g03982 481 SMART cbs_1 168 217 IPR000644 -
Rops8g03982 481 SUPERFAMILY CBS-domain pair 348 480 IPR046342 -
Rops8g03982 481 CDD E_set_AMPKbeta_like_N 24 102 - -
Rops8g03982 481 Gene3D - 335 481 IPR046342 -
Rops8g03982 481 Gene3D - 140 322 IPR046342 -
Rops8g03982 481 ProSiteProfiles CBS domain profile. 344 402 IPR000644 -
Rops8g03982 481 Pfam Glycogen recognition site of AMP-activated protein kinase 21 106 IPR032640 -
Rops8g03982 481 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 139 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03982 Rops-Chr8 81160742 81169526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03982 25 111 Protein tyrosine phosphatase (PTP) family AT3G01510 34.444 9.35e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03982 - - gmx:100778117 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03982 8 81160742 81169526 Rops8g03982 8 81160742 81169526 ECH
Rops8g03982 8 81160742 81169526 Rops6g01856 6 36343516 36349192 PCT