Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03979 ATGTTGAACATGTCAACAGTTCTAAATGGAGAAACATTAAAACAAGGAAATCATTTGTTTTCTAATTCCAATTTCCTTTCATCTTCGTGCCTCCTTGCGACCCCACCACCGCCGTCGCCTTCACTTTTCCGGCCACTTTGTGTTCGCTCAGGCGTTGAGTCGCGACTGTACGCAACACGACCAGTAAGGACAAGGTTGCTGATTTCTGAAATTGTGAGACCAGTGGTAGCAAAGATGGAAGAGGAGGATGATTATGTGGAGTATGTGCCCGTGGCCAAGCGTCGGGCCATGGAAGCTCAGAAGATTCTCCAACGCAAAGGGAAAGCCTCTACTGCCACTGATGATGATTTGGAGAAACTAAGAGTGGCTGAAACTAAGCCCAGTCTTCTGGTTAAGGCATCACAGCTGAAACGAGAACAACCTGAGATCAGTGTGACAGAGCAGATTGTTCAACAGGAGAAGGAAATGATTGAGAATTTGTCTGATAGAAAAACCCTTATGTCTGTTCGTGAATTAGCTAAGGGGATCACCTATACAGAACCTTTGCTTACAGGGTGGAAGCCACCTTTGCACATAAGAAGGATGTCTAAGAAGGAATGTGATTTGATTCGAAAACAGTGGCATATAATAGTTGATGGTGAAGATATCCCACCCCCAATTAAGAATTTCAAGGATATGAGGTTTCCAGAGCCAGTCTTAAAGAATTTGAAAGCTAAGGGGATCGTGCAACCAACACCCATTCAAGTGCAAGGCCTTCCTGTTATCTTATCTGGGCGGGATATGATTGGGATTGCTTTCACAGGCTCTGGAAAAACTCTGGTCTTTGTGCTGCCCATGATCATGGTGGCAATGCAGGAGGAAATTATGATGCCTATAGTTCCTGGAGAAGGACCATTTGGTTTGATTATTTGTCCATCAAGGGAACTGGCTAGGCAAACTTATGATGTGGTTGAACAATTCCTGATACCTTTGAAGGAAGCTGGATATCCAGAGCTGAGGCCTCTGCTTTGTATTGGTGGAGTGGACATGAGATCGCAGCTTGAGATTGTGAAGAAGGGAGTTCATATTGTTGTTGCCACTCCTGGGAGGTTGAAGGATATGTTGGCCAAGAAGAACATGAATCTTGATAACTGTAGGTATTTAACATTAGATGAGGCTGATCGATTGGTAGATTTGGGATTTGAAGATGATATAAGAGAAGTTTTTGATCACTTCTAA 1218 0.4376 MLNMSTVLNGETLKQGNHLFSNSNFLSSSCLLATPPPPSPSLFRPLCVRSGVESRLYATRPVRTRLLISEIVRPVVAKMEEEDDYVEYVPVAKRRAMEAQKILQRKGKASTATDDDLEKLRVAETKPSLLVKASQLKREQPEISVTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTEPLLTGWKPPLHIRRMSKKECDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPVLKNLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVAMQEEIMMPIVPGEGPFGLIICPSRELARQTYDVVEQFLIPLKEAGYPELRPLLCIGGVDMRSQLEIVKKGVHIVVATPGRLKDMLAKKNMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03979 405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 404 IPR027417 -
Rops8g03979 405 Coils Coil 143 163 - -
Rops8g03979 405 FunFam Probable ATP-dependent RNA helicase DDX41 188 405 - -
Rops8g03979 405 SMART ultradead3 240 405 IPR014001 -
Rops8g03979 405 Gene3D - 189 405 IPR027417 -
Rops8g03979 405 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 174 402 - -
Rops8g03979 405 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 221 249 IPR014014 GO:0003724
Rops8g03979 405 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 252 405 IPR014001 -
Rops8g03979 405 Pfam DEAD/DEAH box helicase 245 404 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03979 Rops-Chr8 81092362 81097186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03979 193 402 Eukaryotic Initiation Factors Gene Family AT3G13920 29.524 2.39e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03979 K13116 - gmx:100814127 622.468