Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03978 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCTACAGAGAATACCAGAGAAGATGCAGTTAAACATCAATCACTGATACTTGGCCAGCTCCATAGTCCAAATTCTCATACTTCAACTACAACAAATAATAGTAATGGGTCAAACACAAATTCACAACCATTTCCACCTGTTAAGAAGAAAAGGAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTCATAGCTCTATCACCAAACACTCTTGTGGCCACAAATCGGTTCATGTGTGAAATTTGCAACAAAGGGTTTCAAAGGGACCAAAACCTTCAACTACACAGGCGAGGCCATAACCTGCCATGGAAGCTTAAACAGAGAACAAGCACAGAAGTTAGAAAAAAGGTTTATGTTTGTCCAGAACCCTCATGTGTCCACCATAACCCAGCTCGAGCACTAGGTGATCTTACTGGCATTAAAAAGCACTTTAGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCCGTCCAATCTGACTGGAAAGCCCATTCAAAAATATGTGGTACTAAGGAATACAAATGTGACTGTGGCACCATCTTTTCCAGGAGAGATAGCTTCATCACCCACAGAGCTTTCTGTGATGCACTGGCGGAGGAGAATGACAAGTTCAATGAAGGACATTTATCAAAGATGGGTTCAAACTTGCAGGGCCAATCAATCCCAAACCTAGTTGCATCATTACCAATCAATACCAGTCACAATCAATTCGATCACAAACACCCATTATCACTCCCTCACGAGCTCATGACAATGCCTACTGCAAAACCCTTCAACAACATGGCTGAAACTATATTCACTAGAAACCTTTCATCTCCCTCTCTTCAACTGAGTTCAAACTTTCCAAACATGTTGGAGGAAAATGGTCTCCATTTAGCTGCTGCAGGCTCACCTCACATGTCCGCCACAGCATTGCTGCAAAAAGCTGCACAAATGGGTGCAACTGTGAGTAATAGCAGGGAAAAAAGTTTCATGGCACCACCATCATTTGGTGAGGCACAACAACAATCATATCATGGGATCATGAACCAGTATATGCACAATGGTCAACAGGACTCTCAGTATAATAATATAAATGTGAGTGGTGTTGTTGGAATGAGTGGTTTGGATATGTTTAATGCTATATTGGATCAAAGTAAGGCCTTATCAAAGATCATAGAGCAGAACAGTGGAAGCAGTAACAATGGTAGGTCAAGTAGCACCATTAATATTGGTGGAACTAAAGGAAGTGAGGATGTGATGACATTGGACTTGCTGGGTATTGGAGGCTATGGCGATGCTCAACAGTCAGCAAGAGATGATGAGATTTGGAGAAATTGGTCAAACAAGGACGCAGGTTTTGAATCATTTTCAGCAACAAGCAGCATCTGA 1428 0.4202 MSNITSCDSGSFSTENTREDAVKHQSLILGQLHSPNSHTSTTTNNSNGSNTNSQPFPPVKKKRSLPGNPDPSAEVIALSPNTLVATNRFMCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEVRKKVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALAEENDKFNEGHLSKMGSNLQGQSIPNLVASLPINTSHNQFDHKHPLSLPHELMTMPTAKPFNNMAETIFTRNLSSPSLQLSSNFPNMLEENGLHLAAAGSPHMSATALLQKAAQMGATVSNSREKSFMAPPSFGEAQQQSYHGIMNQYMHNGQQDSQYNNINVSGVVGMSGLDMFNAILDQSKALSKIIEQNSGSSNNGRSSSTINIGGTKGSEDVMTLDLLGIGGYGDAQQSARDDEIWRNWSNKDAGFESFSATSSI* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03978 475 FunFam protein indeterminate-domain 5, chloroplastic-like 143 222 - -
Rops8g03978 475 Pfam Zinc-finger double-stranded RNA-binding 89 111 IPR022755 -
Rops8g03978 475 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Rops8g03978 475 SMART c2h2final6 130 160 IPR013087 -
Rops8g03978 475 SMART c2h2final6 165 185 IPR013087 -
Rops8g03978 475 SMART c2h2final6 89 111 IPR013087 -
Rops8g03978 475 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 40 447 IPR031140 -
Rops8g03978 475 SUPERFAMILY beta-beta-alpha zinc fingers 88 185 IPR036236 -
Rops8g03978 475 MobiDBLite consensus disorder prediction 1 73 - -
Rops8g03978 475 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Rops8g03978 475 Gene3D Classic Zinc Finger 143 222 - -
Rops8g03978 475 MobiDBLite consensus disorder prediction 1 16 - -
Rops8g03978 475 FunFam protein indeterminate-domain 12-like 68 136 - -
Rops8g03978 475 MobiDBLite consensus disorder prediction 29 58 - -
Rops8g03978 475 Gene3D Classic Zinc Finger 69 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03978 Rops-Chr8 81064690 81068557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03978 46 336 IDZ Gene Family AT3G50700 56.000 7.36e-113 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops8g03978 zf-C2H2_jaz 5.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03978 - - gmx:100813556 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03978 8 81064690 81068557 Rops6g01859 6 36427747 36431942 ECH
Rops8g03978 8 81064690 81068557 Rops8g03978 8 81064690 81068557 ECH
Rops8g03978 8 81064690 81068557 Rops6g01859 6 36427747 36431942 PCT