Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03953 ATGGACATTGCCTCTCTTGAGAAGTTTCTTCAAGAGAGGATCAAGGTTGGTGGCAAAGCTGGTGCTCTTGGTGATACTATCACTATTACCCGTGACAAGAGCAAGATCACTGTTACCTCTGACAGTAACTTCTCCAAACGGTATTTGAAGTATTTGACAAAGAAGTACTTGAAGAAACACAACGTACGTGACTGGCTTAGAGTGATTGCTTCAAACAAAGATAGAAGTGTTTATGAACTGAGGTACTTCAACATCGCTGAGAACGAGGGAGAGGAAGAAGATTAA 285 0.414 MDIASLEKFLQERIKVGGKAGALGDTITITRDKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03953 94 FunFam 60S ribosomal protein L22-2 1 94 - -
Rops8g03953 94 Pfam Ribosomal L22e protein family 1 92 IPR002671 GO:0003735|GO:0005840|GO:0006412
Rops8g03953 94 Gene3D - 1 94 IPR038526 -
Rops8g03953 94 PANTHER 60S RIBOSOMAL PROTEIN L22 1 94 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03953 Rops-Chr8 80769762 80771707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03953 1 94 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 89.362 3.38e-49 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03953 K02891 - jre:109012705 174.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03953 8 80769762 80771707 Rops6g01878 6 36653599 36662832 ECH
Rops6g01878 6 36653599 36662832 Rops8g03953 8 80769762 80771707 ECH
Rops8g03953 8 80769762 80771707 Rops8g03953 8 80769762 80771707 ECH
Rops8g03953 8 80769762 80771707 Rops6g01878 6 36653599 36662832 PCT