Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03952 ATGATGATGATGACAATGGAGGGAATGATGGACAAGGGGGTGCTGGATGATGTGATAAGGAGGTTGCTTGAAGGGAAAGGAGGAAAACAGGTTCAGCTTTCTGAGTCGGAGATCCGTCAACTCTGCGTCAACGCCAGACAAATCTTCCTCTCTCAGCCAATTCTCCTTGAGCTTCGTGCTCCCATCCGCATCTGTGGTGATATACATGGTCAGTACCAAGATTTACTGAGGCTTTTTGAATATGGTGGCTACCCACCTGCTGCAAACTACTTGTTTCTGGGGGATTATGTAGACAGAGGGAAGCAAAGTTTGGAGACTATATGTTTGCTTTTGGCTTACAAAATAAGATATCCAGACAAAATTTATCTCTTGAGAGGAAACCATGAAGATGCAAAGATTAACCGGATATATGGTTTTTATGATGAATGTAAAAGGAGGTTCAATGTTAGGCTATGGAAGATATTTACGGACTGCTTTAACTGTTTGCCAGTGGCTGCACTCATTGATGAGAAGATACTTTGTATGCATGGGGGACTCTCTCCAGAATTGGAAAGTTTAGATCAGATAAGGGAGATAACAAGGCCTACTGAAATTCCAGATAATGGTCTCCTATGTGATCTGCTTTGGTCTGATCCTGATTCTAGCATTGAGGGCTGGGCAGACAGTGACCGAGGTGTTTCATGTACTTTTGGACCTGATGTTGTCATAGAGTTTTTGGATAAAAATGATCTTGATCTTGTTTGCAGAGGTCATCAGGTTGTGGAAGATGGATATGAGTTTTTCGCTAAACGAAGATTAGTCACGATATTCTCTGCTCCAAATTATGGTGGGGAATTTGACAACGCAGGTGCATTGTTGAGTGTTGATGAATCTCTTGTATGTTCCTTTGAGATAGTGAAACCCATGGATAGAGGATCAGGAAGTGGTTCATCAAAAATGAATTTTAAGAAGCCCCCTAAACTTGGAAAGGTCTAG 975 0.4195 MMMMTMEGMMDKGVLDDVIRRLLEGKGGKQVQLSESEIRQLCVNARQIFLSQPILLELRAPIRICGDIHGQYQDLLRLFEYGGYPPAANYLFLGDYVDRGKQSLETICLLLAYKIRYPDKIYLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDEKILCMHGGLSPELESLDQIREITRPTEIPDNGLLCDLLWSDPDSSIEGWADSDRGVSCTFGPDVVIEFLDKNDLDLVCRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALLSVDESLVCSFEIVKPMDRGSGSGSSKMNFKKPPKLGKV* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03952 324 PRINTS Serine/threonine phosphatase family signature 243 263 IPR006186 GO:0016787
Rops8g03952 324 PRINTS Serine/threonine phosphatase family signature 61 88 IPR006186 GO:0016787
Rops8g03952 324 PRINTS Serine/threonine phosphatase family signature 90 117 IPR006186 GO:0016787
Rops8g03952 324 PRINTS Serine/threonine phosphatase family signature 265 281 IPR006186 GO:0016787
Rops8g03952 324 PRINTS Serine/threonine phosphatase family signature 123 147 IPR006186 GO:0016787
Rops8g03952 324 PRINTS Serine/threonine phosphatase family signature 157 183 IPR006186 GO:0016787
Rops8g03952 324 PRINTS Serine/threonine phosphatase family signature 186 213 IPR006186 GO:0016787
Rops8g03952 324 Pfam Calcineurin-like phosphoesterase 62 253 IPR004843 GO:0016787
Rops8g03952 324 Pfam Serine-threonine protein phosphatase N-terminal domain 15 59 IPR031675 -
Rops8g03952 324 SUPERFAMILY Metallo-dependent phosphatases 16 303 IPR029052 -
Rops8g03952 324 Gene3D - 8 307 IPR029052 -
Rops8g03952 324 CDD MPP_PP1_PPKL 14 301 - -
Rops8g03952 324 ProSitePatterns Serine/threonine specific protein phosphatases signature. 124 129 IPR006186 GO:0016787
Rops8g03952 324 FunFam Serine/threonine-protein phosphatase 5 310 - -
Rops8g03952 324 MobiDBLite consensus disorder prediction 304 324 - -
Rops8g03952 324 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 19 310 - -
Rops8g03952 324 SMART pp2a_7 33 303 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03952 Rops-Chr8 80687119 80690135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03952 62 249 Calmodulin-binding Proteins AT5G63870 32.735 1.47e-31 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03952 K06269 - gmx:100805030 637.876