Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03943 ATGTCTGGGGCAGATTCACAAAAGAGGAGAGTCGCCATCATAGGCGTCTCTACCTTCTTGCTGGTGGCCATGGTGGTTGCGGTCACAGTTGGTGTCAACTTCAACAAGAATGGTTCCAACAATGACTCAAAGGATAGCAACACCAAATCCCACGTATCTTCATCGGTAAAAGCTGTGAAAACCCTTTGCCAGCCCACAGATTACAAGAAGGAATGTGAGGAAAGTCTCGCAGCACATGCTGGCAACACCACTGACCCAAGAGAACTCATCAAAATTGCATTCAACATAACCATCACAAAAATCGGTGAGGGACTTGAGAAAACCCAACTCATGCAAGATGTTGAGAAGGACCCAAGAACAAAAGAGGCACTCGACACATGCAAACAACTCATGGACCTTTCCATCGAAGAGTTCAAGAGATCACTCGAGAGATTTGGCAAGTTTGATCTCAACAACCTTGACAAAATCCTCACGAGTTTGAAGGTCTGGCTCAGTGGTGCAATCACATACCAAGAAACTTGTTTGGATGCGTTTGAGAACACAACAGCCGATGCTGGTCAGAAGATGAAGGAGGTTTTGCAAACTGCCATGCATATGAGTAGCAATGGCCTTGCCATTATTAATGAACTTTCCAAAACTCTCGCTGACATGCATGTGACAAAACCTGGACGCCGCCTCTTGAAGGAGGATGAAGAAGACTTTGATATTCTTGGTCATGGTGATTTTGAGCTTCCTGATTGGGTTGAGGATCGTGTTGGTGTTCGTAAGCTCCTTCGTATGACTGCACGAAAACTCAGGGCTCATGTTGTTGTTGCTAAGGATGGCACTGGAAATTTCACCACCATCAACGACGCATTGAAGCATGTTCCCAAGAAGAACCTAAAGCCATTCGTTATCTACATTAAGGAGGGCATTTATGAGGAGTACGTTGAAGTTTTCAGAAATATGACCCACGTGGTTTTCATTGGTGATGGTGGTAAAAAGACAAGGATCACTGGCAATAAGAACTTCATTGATGGAGTTGGTACCTACAGAACCGCCACTGTTGCTGTTCTTGGAGATTACTTCGTTGCCATGGGTGTCGGGTTTGAGAACTCCGCTGGAGCTGAAAAACATCAAGCAGTAGCTTTAAGGGTACAAGCTGACAAGTCCATCTTCTACAAGTGCCGAATGGATGGGTTCCAAGATACACTTTATGCCCACACCATGCGTCAGTTTTACAGGGACTGCATCATCACAGGTACCATCGACTTTGTCTTTGGAGATTCCGTGGCCGTTCTTCAAAACTGCACTTTCGTGGTCCGAAAACCATTGGAAAACCAACAATGCATTGTGACCGCACAAGGTAGGAAGGAGAGAAACCAGCCATCAGGAATCATCATCCAAGGAGGTTCCATTGTGTCAGACCCTAAGTACTACCCAGTTAGGTTCGACAACAAAGCCTACTTGGCACGTCCATGGAAGAATTTCTCAAGAACTATCTTCATGGATACTTATATTGGTGATTTGATCACACCTGATGGTTACATGCCATGGCAAACAATTGAAGGTTTATCAGGAATGGACACTTGTTTCTATGCTGAGATCAACAACCGTGGTCCTGGTTCAGACAAATCCAAGCGTGTGAAATGGCAAGGGGTTAAGACACTCACATCAGAAGGAGCCACCAATTTCGTGCCAACAGTGTTCTTCCATGGAGATGATTGGATTAAGGTTACTAGGATTCCTTATTACCCTGGCTCTGGTTCCCCCACTCATTGA 1761 0.452 MSGADSQKRRVAIIGVSTFLLVAMVVAVTVGVNFNKNGSNNDSKDSNTKSHVSSSVKAVKTLCQPTDYKKECEESLAAHAGNTTDPRELIKIAFNITITKIGEGLEKTQLMQDVEKDPRTKEALDTCKQLMDLSIEEFKRSLERFGKFDLNNLDKILTSLKVWLSGAITYQETCLDAFENTTADAGQKMKEVLQTAMHMSSNGLAIINELSKTLADMHVTKPGRRLLKEDEEDFDILGHGDFELPDWVEDRVGVRKLLRMTARKLRAHVVVAKDGTGNFTTINDALKHVPKKNLKPFVIYIKEGIYEEYVEVFRNMTHVVFIGDGGKKTRITGNKNFIDGVGTYRTATVAVLGDYFVAMGVGFENSAGAEKHQAVALRVQADKSIFYKCRMDGFQDTLYAHTMRQFYRDCIITGTIDFVFGDSVAVLQNCTFVVRKPLENQQCIVTAQGRKERNQPSGIIIQGGSIVSDPKYYPVRFDNKAYLARPWKNFSRTIFMDTYIGDLITPDGYMPWQTIEGLSGMDTCFYAEINNRGPGSDKSKRVKWQGVKTLTSEGATNFVPTVFFHGDDWIKVTRIPYYPGSGSPTH* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03943 586 CDD PMEI-like_3 61 212 - -
Rops8g03943 586 FunFam Pectinesterase 55 211 - -
Rops8g03943 586 Pfam Plant invertase/pectin methylesterase inhibitor 58 206 IPR006501 GO:0004857
Rops8g03943 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 212 IPR035513 -
Rops8g03943 586 NCBIfam pectinesterase inhibitor domain 52 210 IPR006501 GO:0004857
Rops8g03943 586 SMART PMEI_2 54 206 IPR006501 GO:0004857
Rops8g03943 586 SUPERFAMILY Pectin lyase-like 266 579 IPR011050 -
Rops8g03943 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 211 IPR035513 -
Rops8g03943 586 Gene3D - 262 581 IPR012334 -
Rops8g03943 586 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Rops8g03943 586 PANTHER PECTINESTERASE 18 571 - -
Rops8g03943 586 FunFam Pectinesterase 262 581 - -
Rops8g03943 586 Pfam Pectinesterase 268 567 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03943 Rops-Chr8 80606468 80609893 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03943 7 584 Carbohydrate Esterase AT3G05610 50.085 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03943 K01051 - gmx:100801686 941.799