Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03942 ATGGCCTTGCTTAATTTCCTTTTGATTCTCATGCTTTTACCCTCGTTTGAGTGTTTCTCAGATGAAATTCCCTCAGGTATCCAAACCCAAGACATGCAAGCCTTGATTGCACAAGCTTGCATGGATGTTGAAAACCAACACACATGCCTCACAAACATTCAAAATGAGCTCACTAAAATTGGTCCTCCAAGCCCAACTTCAGTCATAAGTGCTGCACTTAGGACCACACTCAATGAAGCCATGGGTGCCATCAACAACATGACAAAGGTCACCACATTCTCTGTCAGTTATCGTGAGCAAATGGCCATAGAAGATTGCAAGGAACTCCTTGATTTCTCTGTTTCTGAACTGGCATGGTCATTAGGGGAGATGAGAAGAATTCGTGCAGGTGACAAAAGCGTTCAATATGAGGGCAACCTTGACGCTTGGCTAAGTGCAGCATTAAGCAACCAAGACACATGCCTTGAAGGCTTTGAAGGCACTGATAGACATCTTGAGAGCTACATTAGTGGAAGCTTAACACAAGTTACACAGCTTATAAGCAATGTTCTGTCTTTGTATTCTCAACTACATAGCTTACCCTTTAGGCCTCCAAGGAATACTACTCTACCAACAAGTGAAAGCTTGGACTTTCCTGAATGGATGACCGAGGCTGATCAAGAACTCCTTAAATCTAACTCACATGGTGTCCGTGCAGATGCGGTTGTGGCATTGGATGGGAGTGGTCACTACCGCACAATCACAGAAGCTGTTAATGCAGCTCCAAGTCATAGCAACAGAAGGTATGTTATATACGTGAAGAAGGGACTTTACAAGGAGAATGTTGATATGAAGAAAAAGATGACCAACATCATGCTCGTAGGTGATGGTATTGGCCAAACCATTGTCACAAGCAACCGTAATTTCATGCAAGGATGGACCACTTTTCGAACTGCCACTGTTGCTGTATCCGGGAAGGGATTCATTGCAAGGGACATGTCATTCAGGAACACTGCTGGACCGGTAAATCATCAAGCTGTGGCACTGCGTGTGGATTCAGACCAATCTGCATTCTATAGGTGCAGTGTGGAAGGGCACCAAGACACCCTTTATGCTCACTCACTGAGACAGTTCTACCGTGAATGTGAAATCTATGGCACCATAGACTTCATTTTTGGCAATGGTGCTGCTGTGTTGCAAAATTGCAAGATATACACCAGAGTCCCTCTTCCCTTGCAGAAAGTTACCATCACAGCACAAGGCAGGAAAAGCCCACATCAGAAAACTGGGTTTACAATCCAGGATAGTTTTGTTTTGGCTACTCAGCCTACATATTTGGGGAGGCCATGGAAGCAATACTCTAGAACAGTATACATCAACACATACATGAGTGGGATGGTTCAACCTCGAGGGTGGCTTGAGTGGTTTGGAAACTTTGCCTTGAACACTTTGTGGTATGGTGAGTACAGGAATTATGGACCTGGTTCGTCACTGGCAGGTAGGGTCAAATGGCCTGGTTATCATGTGATTAAAGATGCTGGTACTGCCAGTTTCTTCACTGTTCGGCGGTTCATTAATGGCGACACATGGTTGCCAGGAACAGGCATCAGGTTCACAGAAGGCTTGACCAATTGA 1614 0.4486 MALLNFLLILMLLPSFECFSDEIPSGIQTQDMQALIAQACMDVENQHTCLTNIQNELTKIGPPSPTSVISAALRTTLNEAMGAINNMTKVTTFSVSYREQMAIEDCKELLDFSVSELAWSLGEMRRIRAGDKSVQYEGNLDAWLSAALSNQDTCLEGFEGTDRHLESYISGSLTQVTQLISNVLSLYSQLHSLPFRPPRNTTLPTSESLDFPEWMTEADQELLKSNSHGVRADAVVALDGSGHYRTITEAVNAAPSHSNRRYVIYVKKGLYKENVDMKKKMTNIMLVGDGIGQTIVTSNRNFMQGWTTFRTATVAVSGKGFIARDMSFRNTAGPVNHQAVALRVDSDQSAFYRCSVEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQKTGFTIQDSFVLATQPTYLGRPWKQYSRTVYINTYMSGMVQPRGWLEWFGNFALNTLWYGEYRNYGPGSSLAGRVKWPGYHVIKDAGTASFFTVRRFINGDTWLPGTGIRFTEGLTN* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03942 537 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 191 IPR035513 -
Rops8g03942 537 CDD PMEI-like_4 47 190 - -
Rops8g03942 537 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 191 IPR035513 -
Rops8g03942 537 SUPERFAMILY Pectin lyase-like 230 534 IPR011050 -
Rops8g03942 537 Gene3D - 227 535 IPR012334 -
Rops8g03942 537 FunFam Pectinesterase 33 192 - -
Rops8g03942 537 NCBIfam pectinesterase inhibitor domain 6 191 IPR006501 GO:0004857
Rops8g03942 537 PANTHER PECTINESTERASE 12 525 - -
Rops8g03942 537 Pfam Plant invertase/pectin methylesterase inhibitor 35 186 IPR006501 GO:0004857
Rops8g03942 537 FunFam Pectinesterase 227 535 - -
Rops8g03942 537 ProSitePatterns Pectinesterase signature 2. 377 386 IPR033131 -
Rops8g03942 537 SMART PMEI_2 31 186 IPR006501 GO:0004857
Rops8g03942 537 Pfam Pectinesterase 233 521 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03942 Rops-Chr8 80602504 80605001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03942 1 537 Carbohydrate Esterase AT3G05620 62.295 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03942 K01051 - gmx:100810565 966.452