Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03936 ATGACCTCTTTGAGCAGAGAATTGGTGTTTCTCATACTCCAATTTCTGGAGGAGGAGAAGTTCAAAGAGTCGGTGCACAAGCTTGAGAAAGAATCTGGGTTTTTCTTCAATATGAAGTACTTTGAGGAAAAAGTACAGGCCGGTGAATGGGAAGAAGTTGAGAAGTACTTGGCAGGGTTTACCAAAGTTGATGATAATAGATACTCTATGAAAATATTCTTTGAAATCAGGAAGCAGAAATATCTGGAAGCGCTTGATGGACAAGACAAAGCAAAGGCTGTTGAGATATTAGTGGGTGATTTGAAAGTATTTTCCACCTTCAATGAGGAACTATACAAAGAAATCACACAGCTGTTAACTCTTAATAATTTCAGGGAGAATGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAGGAATTATGTTGATAGAGCTAAAAAAGCTCATAGAGGCAAATCCTCTTTTCCGTGATAAGCTCATCTTCCCTACTCTTAAGTCATCAAGATTGCGGACATTAATCAATCAAAGTTTGAACTGGCAGCACCAGCTTTGCAAAAACCCGAGGCCAAATCCAGATATAAAGACTTTATTCACTGATCACGCATGTACACCTAATGGTCCTCTAGCACCTACACCTGTCAATCTTCCAGTTGCTGCTGTTGCAAAGCCTGCTGCTTATACTTCACTTGGAGGTCATGGGCCCTTTCCCTCTGCTGCAGCAACTGCTAATGCTAATGCTCTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCATCTGTCCAAGCTGCTGTTGTCACAGCATCAACCATACCTGTCCCACAGAATCAAGTGTCCATCTTGAAGCGTCCAAGAACACCTTCAACAACACCTGGCATGGTTGATTATCAGAATGCTGATCATGAACAGCTAATGAAAAGACTGCGGCCTGCTCCTTCTGTAGAGGAGGTTTCCTATCCTACAGCTCGACAAGCCTCTTGGTCACTGGATGATCTACCAAGAACAGTGGCTATGACTTTGCATCAAGGATCCTCTGTGACAAGCATGGATTTTCATCCTTCTCACCAAACCTTACTTCTTGTTGGTTCCAATAATGGTGAAATTTCCCTTTGGGAACTTGGGTTGCGAGAAAAGTTGGTCTCAAAGCCATTCAAGATATGGGATATATCAGCATGCTCATTACCATTTCAGGCAGCTATGGTCAAAGATGCACCTATTTCTGTCAGCCGTGTTACATGGAGCCTTGATGGAAGTTTTGTGGGTGTTGCATTTACTAAACATTTGATTCACTTGTATGCCTACACTGGATCAAATGAGCTGGCCCAGCGTATAGAGATTGATGCCCATATTGGTGGTGTGAATGACTTGGCATTTGCTCATCCAAATAAACAGCTCTGTATTGTGACTTGTGGAGATGATAAGTTGATAAAGGTGTGGGATTTAACTGGACGAAGACTATTTAACTTTGAAGGGCATGAGGCATCTGTATATTCCATCTGTCCTCATCACAAGGAAAACATTCAGTTCATATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTATACGATAATATGGGTTCTAGGGTTGACTATGATGCCCCTGGTCACTGGTGTACTACAATGCTTTACAGTGCTGATGGAAGTAGATTATTTTCTTGTGGGACAAGTAAAGATGGAGAGTCATTCCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACATACAATGGGTTTAGAAAGAAATCTGCTGGTGTTGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGCTGCTGGTGAAGATGGCCATATTAAGTTTTGGGACATGGACAATATTAATCTTCTAACAAGCATTGATGCGGAGGGTGGACTACAGGCCCTTCCACACCTGAGATTCAACAAGGAAGGAAATCTTCTTGCTGTCACTACTGCAGATAATGGATTCAAAATTCTGGCTAATGCTAATGGTCTTAGATCCCTAAGAACAATTGAAACTCCAGCATTTGAAGCATTGAGGTCACCTGTTGAATCTGCTGCAATCAAGGTGTCTGGCTCTTCTGCTATTAATGTTAGTCCTGTCAGCTGTAAAGTGGAAAGGAGCTCTCCTGTCAGGCCTTCTCCTATTCTTAATGGAGTTGATCCCTCGGGTCGAAATGTGGAGAAGCCTAGAACTGTGGAGGATGTAATTGATAGAACTAAACCATGGCAGCTGTCGGAAATCGTGGAACCTGTCCAACGTCGGTTAGTTACCATGCCTGATAACACAGATTCTTCCAGCAAGGTTGTTCGACTGTTATATACAAATTCTGGTGCTGGTCTTTTGGCACTTGGTTCAAATGGTGTTCAGAAGCTGTGGAAGTGGGCTCGCAATGAACAGAATCCAAGTGGGAAGGCAACTGCCAGTGTGGTTCCACAACATTGGCAACCCAACAGTGGTCTTCTTATGACTAATGATATCTCGGGTGTCAACCTTGATGAAGCGGTTCCTTGCATTGCTCTCTCAAAAAATGATTCATATGTTATGTCTGCCTGTGGTGGAAAGGTTTCGTTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGTCACCACCTCCTGCCTCTACCTTCCTGGCTTTCCACCCTCAGGATAACAACATCATAGCCATTGGGATGGAGGATTCAACTATTCACATTTATAATGTTAGAGTGGATGAGGTGAAATCAAAATTGAAGGGCCACCAAAAGCGAATTACTGGTTTAGCCTTTTCAACCAATCTTAACATTCTGGTTTCATCTGGTGCTGATGCTCATCTTTGTGTGTGGAGCATTGATACATGGGAGAAAAGAAAATCAATTCCTATACAACTACCCGCAGGAAAGGCTCCTGTTGGTGACACTCGAGTGCAGTTTCATTCAGACCAACTCCGGTTATTGGTAGCCCATGAGACTCAGTTGGCAATATATGATGCCTCTAAGATGGAACGCATTCGGCAGTGGGTTCCACAAGATGTTCTGCCTGCTCCCATATCATACGCAGCTTATTCCTGCAACAGTCAGTTAATATATGCTACATTTTGCGATGGCAACACTGGTGTTTTTGATGCCGACAGCTTGAGACTAAGATGTCGTATTGCACCATCAACATACTTTTCACCGGCAGCTTTCAGTGGAAGCCAAGGGGTGTATCCTGTTGTTGTTGCGGCTCATCCGTTAGAGCCCAACCAATTTGCCCTTGGATTGACTGATGGGTCGGTGAAAGTGATAGAGCCCAGTGAATCAGAGGGAAAATGGGGATCTAGCCCACCTGTGGATAATGGAATATTGAACGGTAGGACAGCATCATCATCTACAACAAGCACCCACACGCCTGATCAGGCACAACGATAA 3387 0.4334 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLAGFTKVDDNRYSMKIFFEIRKQKYLEALDGQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLNNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHACTPNGPLAPTPVNLPVAAVAKPAAYTSLGGHGPFPSAAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQVSILKRPRTPSTTPGMVDYQNADHEQLMKRLRPAPSVEEVSYPTARQASWSLDDLPRTVAMTLHQGSSVTSMDFHPSHQTLLLVGSNNGEISLWELGLREKLVSKPFKIWDISACSLPFQAAMVKDAPISVSRVTWSLDGSFVGVAFTKHLIHLYAYTGSNELAQRIEIDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRRLFNFEGHEASVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGHIKFWDMDNINLLTSIDAEGGLQALPHLRFNKEGNLLAVTTADNGFKILANANGLRSLRTIETPAFEALRSPVESAAIKVSGSSAINVSPVSCKVERSSPVRPSPILNGVDPSGRNVEKPRTVEDVIDRTKPWQLSEIVEPVQRRLVTMPDNTDSSSKVVRLLYTNSGAGLLALGSNGVQKLWKWARNEQNPSGKATASVVPQHWQPNSGLLMTNDISGVNLDEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCVWSIDTWEKRKSIPIQLPAGKAPVGDTRVQFHSDQLRLLVAHETQLAIYDASKMERIRQWVPQDVLPAPISYAAYSCNSQLIYATFCDGNTGVFDADSLRLRCRIAPSTYFSPAAFSGSQGVYPVVVAAHPLEPNQFALGLTDGSVKVIEPSESEGKWGSSPPVDNGILNGRTASSSTTSTHTPDQAQR* 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03936 1128 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Rops8g03936 1128 SMART WD40_4 573 613 IPR001680 GO:0005515
Rops8g03936 1128 SMART WD40_4 860 900 IPR001680 GO:0005515
Rops8g03936 1128 SMART WD40_4 334 373 IPR001680 GO:0005515
Rops8g03936 1128 SMART WD40_4 527 570 IPR001680 GO:0005515
Rops8g03936 1128 SMART WD40_4 903 942 IPR001680 GO:0005515
Rops8g03936 1128 SMART WD40_4 483 524 IPR001680 GO:0005515
Rops8g03936 1128 SMART WD40_4 998 1034 IPR001680 GO:0005515
Rops8g03936 1128 SMART WD40_4 821 857 IPR001680 GO:0005515
Rops8g03936 1128 SMART WD40_4 1048 1089 IPR001680 GO:0005515
Rops8g03936 1128 SMART WD40_4 440 481 IPR001680 GO:0005515
Rops8g03936 1128 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Rops8g03936 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 910 951 IPR001680 GO:0005515
Rops8g03936 1128 FunFam Topless-related protein 3 729 963 - -
Rops8g03936 1128 Gene3D - 763 1097 IPR015943 GO:0005515
Rops8g03936 1128 Gene3D - 321 561 IPR015943 GO:0005515
Rops8g03936 1128 FunFam TOPLESS-related 3 401 698 - -
Rops8g03936 1128 Gene3D - 562 690 IPR015943 GO:0005515
Rops8g03936 1128 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 910 945 - -
Rops8g03936 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 591 622 IPR001680 GO:0005515
Rops8g03936 1128 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 345 947 IPR011047 -
Rops8g03936 1128 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1112 IPR027728 GO:0006355
Rops8g03936 1128 MobiDBLite consensus disorder prediction 1089 1128 - -
Rops8g03936 1128 SMART ctlh 34 92 IPR006595 -
Rops8g03936 1128 SUPERFAMILY WD40 repeat-like 764 1088 IPR036322 GO:0005515
Rops8g03936 1128 Pfam WD domain, G-beta repeat 447 481 IPR001680 GO:0005515
Rops8g03936 1128 Pfam WD domain, G-beta repeat 342 372 IPR001680 GO:0005515
Rops8g03936 1128 Pfam WD domain, G-beta repeat 909 942 IPR001680 GO:0005515
Rops8g03936 1128 SMART Lish 4 36 IPR006594 GO:0005515
Rops8g03936 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 340 382 IPR001680 GO:0005515
Rops8g03936 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 447 482 IPR001680 GO:0005515
Rops8g03936 1128 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 329 436 IPR011044 -
Rops8g03936 1128 ProSitePatterns Trp-Asp (WD) repeats signature. 468 482 IPR019775 -
Rops8g03936 1128 MobiDBLite consensus disorder prediction 1105 1128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03936 Rops-Chr8 80518508 80527556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03936 446 655 Miscellaneous Gene Families AT5G08390 25.234 3.32e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03936 - - gmx:100800771 2073.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03936 8 80518508 80527556 Rops8g03936 8 80518508 80527556 ECH
Rops8g03936 8 80518508 80527556 Rops6g01897 6 36847473 36849526 PCT