Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03930 ATGAAAGCACAGGTTACCAACGTTGAAGTTGTTGAAATGGCAAGAAGATTAGCATTGAAAGAAGGTTTGCTGAAACCCAATTCATTCTTTTGCGTTTTGCTTTGTTCTGTTTCCTCCTCTCTCTCCTCTCAGATGGTAAGGGGAGGAAAGGTTAGTGGCAAACGCAATTTTAGGAAAAGGGTTCGGTCAAAGGAAGGTGGTTCCGATGATTCTGATGAGGATTATGTGGTTTCAGATGATGGTAGGGATGTGTCTGATTGTGCAGAGGATTATTGCTCCTCTTTAGATGGATGTGCATCTGAGGATAGTTTTGACGGTTTTATTGAAGAGGAGGAGGAAATTCCTCTAGTGAGGAAAAAATTTATTGAAGAGGAGGATGAAGAGGAGGAGGAAATTCCACAAGTGAGGAAAAAAATTAATAGATCAAAGGTCACAAATGGTGTATGTGGTCAACGGAAGAATGCTAGTAAAACTTCGCGAAAGAGGGGAAGGATTCCACATGCTAAAGAACTAGAACAAGAAGAAGAAGAACAAGAGGAAGATGAGGATGAGGATTATGATGATGAAGAATTTACACCAGAGGAAGAAGATTACTCAGATGAGGAAGAAGAAACAAAGGGGAGAAAGAAGAAAAATAATGGCATGAAAATGGGCAAGAAGGTTTTGCGGGGAAGGGTTTCTGTGACTTCTAGACGAGGTCGAAAAAGGAGGAGTTCTAAAGTTTCAAAGAAGTCATTGAGAAAGAAAAGACGAAAGAATGGAGGGTTAAGGAGGCAAGTGCAACGAGATGATATGGATGATTTTATGGATAATGGCCCAGCCATCAGGCTAAATAGTAGGAAAAGACCGGGCAGGAAAAGGAGAAGGGTTCTCCTTGAAGATTCCAATTCAGATTCAGATTGTGTGTATGGGTCATCTGATTACGAGTTTACTATCTCTGAAGAAGAAAGAGAACAGGTGAGAGAAGCCAAGGAATTATGTGAAAGTTTAAGAAGGAACTTGAGGAGTGCTTCCCTTCCAATGAAAAATGAAGAGGTTGGAGTGCATGATAGTCTACATCAGCAACAGAGGCCTCCAGCCCGGAAAGGTAAGGAAAAGATAGAGGAAGCCCAGGGAAGAAAGGGTAAGGAAAAGGTAGAGGATTTAAAAAGTGAGATGGGGAAGCAGGTGTGTGGAATTTGTCTGTCTGAAGAAAATAAAAGGAAAGTAAGGGGAGTGCTAGATTGTTGCACTCACTATTTTTGTTTTGCTTGCATTATGGAGTGGTCAAAGGTGGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGTAAGCCTGCACGATCAACAGCAGGGGTTGATTTGAGAGAAGTGGTGATACAAGTGCCCGAACGTGATCAGGTTTATCAGCCATCTGAAGAAGAACTTAGGAGCTATATTGATCCATATGAATCTGTTATTTGTTCAGAGTGCCACCAAGGTGGAGATGATGGCTTCATGTTACTCTGTGATATCTGTGATTCCCCTGCACACACTTATTGTGTTGGTTTGGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGTTGTAGACCAGTTGCGTTGGAATCTTCAAACTCCCAAGTTCAAGAACGTGTGGCTGATTCTAGGGTGACAACCCAAAGCCTGCCTGTTAGACCATCACCTATTCTTCATGGACGTGAAAGTATAGATCTCAACTTAATGTCTTCACCTCATACATCTTTTAGTCAAGGGTTCAGGCATCTTTCATCTTCTAGATTTTCTGGCAGAAGTGCTGAAGGAGCTTCTCCATTATCTGGAGGGGCACCAACTTTATCAGAGAGACGCTGGATACACCGTCAAATTCATCAGCTACTTTCAATTGATAGAATGACTTCTGCAACTGGTAGAACTAATGGTAGTTCAGCTACTGGTTCAACTAGTAACGTACCTAGCTCTCAAATTGATCAGAGTAGGGAACCAGCCACTCCGCATACAAGGACACAGGATGTGGGAACATCACATTACACATTCTTTGAGGAGAGATTATGCAATGATATCTCTCCATTTATGCAGAATGGAGATCCCTTCTCCATAAGAATAAGCAATTCAAGAAGGCCAGTGGTTCAGGATTCAACCATGTTTGCCAACAGGCCTGTGAATGGGGTGCTATGGCCTGGACTTTTGGGGACACCCTCCTTATCAGATTATGAACCAATCAATCAGTTTAGCAGCAGATCAAACATTGTTACTGATAGCAGTTTGTCCCCTGCTATCAAGGAAGAAAGTAACTTCCACATTGTAAAGGAGCAGTTGCAGTCAATGGTTAAAGGCCATCTGAAAAGCTTGTCTCGAGATATTGATTTAGGCCATAATACATTCAAGGACATTGCAAGGAGTTCTACGCATACCATACTAGCAGCTTGTGGTCTTGAGCACAAGAAGAGTGAGGTTTGCACTGTGCCCCCACCATCTGTCTGCCCCCACATTGAATTAATGGCTGGTGGACTAACGAGTCTGATTAAAGGTTGCTGCTCCTCTTGCTTTGATTCTTTTGTAAGAGATGTGGTGAAAAGGATTTTGGACACAAGAACTTCGTCACACTGGTTACGATTAGGACTTTAG 2616 0.4243 MKAQVTNVEVVEMARRLALKEGLLKPNSFFCVLLCSVSSSLSSQMVRGGKVSGKRNFRKRVRSKEGGSDDSDEDYVVSDDGRDVSDCAEDYCSSLDGCASEDSFDGFIEEEEEIPLVRKKFIEEEDEEEEEIPQVRKKINRSKVTNGVCGQRKNASKTSRKRGRIPHAKELEQEEEEQEEDEDEDYDDEEFTPEEEDYSDEEEETKGRKKKNNGMKMGKKVLRGRVSVTSRRGRKRRSSKVSKKSLRKKRRKNGGLRRQVQRDDMDDFMDNGPAIRLNSRKRPGRKRRRVLLEDSNSDSDCVYGSSDYEFTISEEEREQVREAKELCESLRRNLRSASLPMKNEEVGVHDSLHQQQRPPARKGKEKIEEAQGRKGKEKVEDLKSEMGKQVCGICLSEENKRKVRGVLDCCTHYFCFACIMEWSKVESRCPLCKQRFKTISKPARSTAGVDLREVVIQVPERDQVYQPSEEELRSYIDPYESVICSECHQGGDDGFMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALESSNSQVQERVADSRVTTQSLPVRPSPILHGRESIDLNLMSSPHTSFSQGFRHLSSSRFSGRSAEGASPLSGGAPTLSERRWIHRQIHQLLSIDRMTSATGRTNGSSATGSTSNVPSSQIDQSREPATPHTRTQDVGTSHYTFFEERLCNDISPFMQNGDPFSIRISNSRRPVVQDSTMFANRPVNGVLWPGLLGTPSLSDYEPINQFSSRSNIVTDSSLSPAIKEESNFHIVKEQLQSMVKGHLKSLSRDIDLGHNTFKDIARSSTHTILAACGLEHKKSEVCTVPPPSVCPHIELMAGGLTSLIKGCCSSCFDSFVRDVVKRILDTRTSSHWLRLGL* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03930 871 MobiDBLite consensus disorder prediction 173 201 - -
Rops8g03930 871 SMART PHD_3 483 528 IPR001965 -
Rops8g03930 871 SUPERFAMILY RING/U-box 390 439 - -
Rops8g03930 871 Coils Coil 168 189 - -
Rops8g03930 871 ProSiteProfiles Zinc finger RING-type profile. 391 433 IPR001841 -
Rops8g03930 871 MobiDBLite consensus disorder prediction 225 256 - -
Rops8g03930 871 ProSiteProfiles Zinc finger PHD-type profile. 481 530 IPR019787 -
Rops8g03930 871 SUPERFAMILY FYVE/PHD zinc finger 455 529 IPR011011 -
Rops8g03930 871 ProSitePatterns Zinc finger RING-type signature. 410 419 IPR017907 -
Rops8g03930 871 MobiDBLite consensus disorder prediction 119 299 - -
Rops8g03930 871 MobiDBLite consensus disorder prediction 139 154 - -
Rops8g03930 871 MobiDBLite consensus disorder prediction 348 379 - -
Rops8g03930 871 CDD RING-HC_Topors 389 436 - -
Rops8g03930 871 Pfam Ring finger domain 390 433 IPR001841 -
Rops8g03930 871 PANTHER F18C1.6 PROTEIN 45 862 - -
Rops8g03930 871 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 367 455 IPR013083 -
Rops8g03930 871 SMART ring_2 391 432 IPR001841 -
Rops8g03930 871 Coils Coil 313 333 - -
Rops8g03930 871 MobiDBLite consensus disorder prediction 57 81 - -
Rops8g03930 871 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 470 553 IPR013083 -
Rops8g03930 871 Pfam PHD-finger 483 529 IPR019787 -
Rops8g03930 871 MobiDBLite consensus disorder prediction 625 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03930 Rops-Chr8 80431061 80439071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03930 401 527 C2H2 Transcription Factor Family AT3G01460 27.972 8.93e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops8g03930 PHD 1.9e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03930 - - gmx:100791422 958.362