Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03926 ATGGTAATCATGGATCTCAAGGAGAAGGAATGGTCATCTGAGGGATTTAGTGAGATCAAGAAGTGTTGCACTGATTGCAAAACCACCAAGACCCCACTTTGGAGAGGAGGACCAGCTGGACCCAAGACATTGTGCAACGCTTGTGGAATTAGGTACCGGAAGAGAAGGGCATGTACTGTGGGAATGAGTAAAGGACAAGAGAGGAAGAGACAGAGAGCAGAGAATGTTGTAACCGGAAGCTCCGGTAAAACAGTTGGTGGTGGGAGTGAATTGAGGGATTCATTGAAAATGAAGTTAGTGGCTTTGGGTGAAGAGGTTTTGTTGCAACGTTCACCTTCGGTTCTGAAGAAACAGAGGAGGAACAAGTTAGGGGAAGAGGAACAAGCAGCCGTATGTTTGATGGCACTGTCTTGCGGCTTTGTTTTCGCTTAA 432 0.4653 MVIMDLKEKEWSSEGFSEIKKCCTDCKTTKTPLWRGGPAGPKTLCNACGIRYRKRRACTVGMSKGQERKRQRAENVVTGSSGKTVGGGSELRDSLKMKLVALGEEVLLQRSPSVLKKQRRNKLGEEEQAAVCLMALSCGFVFA* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03926 143 ProSitePatterns GATA-type zinc finger domain. 23 48 IPR000679 GO:0006355|GO:0043565
Rops8g03926 143 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 19 57 - -
Rops8g03926 143 Pfam GATA zinc finger 23 56 IPR000679 GO:0006355|GO:0043565
Rops8g03926 143 SMART GATA_3 17 68 IPR000679 GO:0006355|GO:0043565
Rops8g03926 143 Gene3D - 18 78 IPR013088 GO:0006355|GO:0008270
Rops8g03926 143 PANTHER OS01G0976800 PROTEIN 17 142 - -
Rops8g03926 143 MobiDBLite consensus disorder prediction 63 90 - -
Rops8g03926 143 ProSiteProfiles GATA-type zinc finger domain profile. 23 53 IPR000679 GO:0006355|GO:0043565
Rops8g03926 143 CDD ZnF_GATA 23 56 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03926 Rops-Chr8 80389662 80390924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03926 13 143 C2C2-Gata Transcription Factor Family AT3G06740 50.758 1.00e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops8g03926 GATA 3.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03926 - - cam:101512290 177.948