Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03925 ATGTCGTATCAACCTAACGGAAACGCGAGGACCGAGGTCCGTCGGAATCGATACAAGGTGGCCGTAGATGCTGAAGAAGGTCGCCGGCGACGAGAGGATACGATGGTTGAGATCCGAAAGAACCGTAGGGAAGAGAGCTTGCAGAAGAAAAGGCGTGAAGGCCTCCAAGCTCAGCAGGTGTCTGCATCAGTTCACTCTACACTATTAGAGAAGAAGTTGGAATACCTACCATCCATGGTTTTAGGCATTTGGACTGATGATAATAATCTGCAGTTCGAGGCGACAACTCAGTTTAGGAAGTTGCTTTCAGTTGAACGTAGCCCACCAATTGAGGAGGTTATACAAGCTGGTGTAGTTCCACGTTTTGTTGAGTTTTTGATGAGGGAAGATTTTCCACAGCTACAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAACACTAAGGTAGTAATTGATCATGGTGCCGTCCCAAGTTTTGTAAAGCTTCTAGGTTCTCCCAGTGATGATGTCCGTGAACAGGCTGTGTGGGCATTAGGAAATGTTGCAGGAGATTCTCCCAGATGCCGTGATCTCGTTCTCAGTCATGGAGCTTTGCTTCCTCTGTTGGCACAATTGAATGAGCATGCCAAGCTTTCTATGCTTAGAAATGCTACCTGGACTCTTTCAAACTTTTGCAGGGGGAAGCCACAGCCTGCTTTTGATCAGCTTAAACCTGCACTTCCTGCACTTGCTGGTCTCATCCATTCGAATGATGAAGAAGTTTTGACTGATGCCTGTTGGGCACTTTCATATCTTTCTGATGGTACAAGTGACAAAATTCAAGGGGTAATTGAAGCTGGTGTCTGTAGCCGGCTTGTTGAGCTTCTACTGCACCCATCCCCTTCCGTGCTTATTCCTGCTCTTCGGGCAGTTGGAAATATTGTCACTGGAGATGATGTGCAGACACAGGTTATCATCAACCATCAAGCTCTTCCTTGTCTTCTAAATCTCTTGACTAATAATTATAAAAAAAGCATCAAGAAGGAAGCATGTTGGACCATATCAAACATCACAGCTGGGAATAAACAGCAGATTCAGGCTGTAATTGAGGCTAATCTAATTGGCCCTTTAGTCCATTTGCTTCAAAATGCTGAGTTTGACGTCAAGAAAGAAGCTGCTTGGGTCATCTCAAATGCTACATCGGGTGGATCTCATGAACAAATCAAGTACCTGGTAAGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATATGTCCTGATCCTAGGATTGTGACGGTGTGCCTTGGAGGGCTTGAAAACATCTTGAAGGTAGGAGAAGCTGATAAAAATGTTGGCAAAACCGATGGTGTGAATGTATATGCCCAAATGATTGATGATGCCGAGGGGTTGGATAAAATTGAGAACCTCCAGAGTCATGACAACACTGAGATTTATGAAAAGGCAGTGAAGATTCTCGAGACATACTGGTTGGAAGAAGAATATGAGACCGTGCCTCCAGGGGATGGTTCTCAATCAGGGTTCAACTTTGGTGGTCCTGAACTCCCTCCTATGCCTTCTGGTGGATTCAACTTTAATTAG 1599 0.449 MSYQPNGNARTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLQAQQVSASVHSTLLEKKLEYLPSMVLGIWTDDNNLQFEATTQFRKLLSVERSPPIEEVIQAGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPSFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPAFDQLKPALPALAGLIHSNDEEVLTDACWALSYLSDGTSDKIQGVIEAGVCSRLVELLLHPSPSVLIPALRAVGNIVTGDDVQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANLIGPLVHLLQNAEFDVKKEAAWVISNATSGGSHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLGGLENILKVGEADKNVGKTDGVNVYAQMIDDAEGLDKIENLQSHDNTEIYEKAVKILETYWLEEEYETVPPGDGSQSGFNFGGPELPPMPSGGFNFN* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03925 532 FunFam Importin subunit alpha 13 52 - -
Rops8g03925 532 FunFam Importin subunit alpha 74 497 - -
Rops8g03925 532 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Rops8g03925 532 Pfam Atypical Arm repeat 458 502 IPR032413 -
Rops8g03925 532 PIRSF Importin_alpha 5 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Rops8g03925 532 PANTHER IMPORTIN ALPHA 14 500 - -
Rops8g03925 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Rops8g03925 532 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Rops8g03925 532 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Rops8g03925 532 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Rops8g03925 532 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Rops8g03925 532 Pfam Armadillo/beta-catenin-like repeat 317 358 IPR000225 GO:0005515
Rops8g03925 532 Pfam Armadillo/beta-catenin-like repeat 279 314 IPR000225 GO:0005515
Rops8g03925 532 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Rops8g03925 532 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Rops8g03925 532 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Rops8g03925 532 MobiDBLite consensus disorder prediction 509 532 - -
Rops8g03925 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Rops8g03925 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Rops8g03925 532 Gene3D - 74 497 IPR011989 -
Rops8g03925 532 Gene3D - 13 52 IPR036975 GO:0006606
Rops8g03925 532 SMART arm_5 106 147 IPR000225 GO:0005515
Rops8g03925 532 SMART arm_5 317 358 IPR000225 GO:0005515
Rops8g03925 532 SMART arm_5 275 315 IPR000225 GO:0005515
Rops8g03925 532 SMART arm_5 190 232 IPR000225 GO:0005515
Rops8g03925 532 SMART arm_5 403 443 IPR000225 GO:0005515
Rops8g03925 532 SMART arm_5 234 273 IPR000225 GO:0005515
Rops8g03925 532 SMART arm_5 360 400 IPR000225 GO:0005515
Rops8g03925 532 SMART arm_5 149 189 IPR000225 GO:0005515
Rops8g03925 532 SUPERFAMILY ARM repeat 15 498 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03925 Rops-Chr8 80381118 80386072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03925 132 413 U-box Gene Family AT3G46510 24.823 3.49e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03925 K15042 - gmx:100789135 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03925 8 80381118 80386072 Rops6g01913 6 36973218 36981649 ECH
Rops6g01913 6 36973218 36981649 Rops8g03925 8 80381118 80386072 ECH
Rops8g03925 8 80381118 80386072 Rops8g03925 8 80381118 80386072 ECH
Rops8g03925 8 80381118 80386072 Rops6g01913 6 36973218 36981649 PCT