Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03924 ATGGATCGGGAAGGAGGAGGATCCAACGGCGGATCTTGCTATTACTCTGTTCTCGGGATTCGTAGGGACGCCTCCTTCTCTGATATTCGCACTGCTTACCGCAAACTTGCTATGAAGTGGCACCCGGACAGATGGACTCGGAACCCTGCAACTGCCGGAGAAGCCAAGCGGCGGTTTCAGCAAATCCAGGAAGCTTATTCGGTTCTTTCTGATCAGTCTAAAAGGTCAATGTATGATGCGGGGCTCTACGATCCTTTAGAGGAAGATGACCAAGAATTCTGTGACTTTATGCAAGAAATGATCTCAATGATGAATAATGTCAAAGACGAGGGGGACAGTTTGGAAGACCTACAAAGGATGTTCGTGGAGATGGTGAGTGATGATGGAATGAGCTTTGGTTTGAATCAGGATCAGACGGCTGGCAAGAGAGGACGCGTGAGTGGATCAAGAGGTAACGCAGCCAAGCGCAGCAACTGTTGCCGATAG 486 0.4938 MDREGGGSNGGSCYYSVLGIRRDASFSDIRTAYRKLAMKWHPDRWTRNPATAGEAKRRFQQIQEAYSVLSDQSKRSMYDAGLYDPLEEDDQEFCDFMQEMISMMNNVKDEGDSLEDLQRMFVEMVSDDGMSFGLNQDQTAGKRGRVSGSRGNAAKRSNCCR* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03924 161 Gene3D DnaJ domain 2 104 IPR036869 -
Rops8g03924 161 PANTHER PUTATIVE, EXPRESSED-RELATED 8 136 - -
Rops8g03924 161 SMART dnaj_3 12 74 IPR001623 -
Rops8g03924 161 CDD DnaJ 13 71 IPR001623 -
Rops8g03924 161 PRINTS DnaJ domain signature 15 33 IPR001623 -
Rops8g03924 161 PRINTS DnaJ domain signature 54 74 IPR001623 -
Rops8g03924 161 PRINTS DnaJ domain signature 33 48 IPR001623 -
Rops8g03924 161 Pfam DnaJ domain 14 79 IPR001623 -
Rops8g03924 161 SUPERFAMILY Chaperone J-domain 13 85 IPR036869 -
Rops8g03924 161 ProSitePatterns Nt-dnaJ domain signature. 59 78 IPR018253 -
Rops8g03924 161 MobiDBLite consensus disorder prediction 132 161 - -
Rops8g03924 161 ProSiteProfiles dnaJ domain profile. 13 82 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03924 Rops-Chr8 80373365 80374908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03924 13 80 C2H2 Transcription Factor Family AT1G74250 42.029 9.22e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03924 - - mtr:11423150 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03924 8 80373365 80374908 Rops8g03924 8 80373365 80374908 ECH