Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03912 ATGTCTCACACCAGCAACAATGTGGCTGGGGTCGACAACACGTTCAGAAGAAAATTTGATCGGGAAGAGTATCTGGAACGTGCTCGAGAGCGTGAGAGACAGGAGGAGGAAAATCGATCAAAACCTAAAGCTAAAGGTCCTCTCGTGCAGAGGAAGCCCTTGAAACATAGAGATTATGAAGTAGACCTCGAATCCCGCCTGGGCAAGACTCAGGTTGTTACACCGGTTGCACCATTAAGCCAGCAGGCTGGATACTACTGCTCAGTATGTGAGTGTGTGGTAAAGGACTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCTTTGGGCATGTCTATGCGAGTAGAACGTGCTTCTCTCCAACAGGTTCAGGAACGGTTTGAAGTTCTTAAGAAACGAAAAGATCTTGGCAGCTTCACAGAGCAAGATCTTGATGAGCGGATTTTAAAACAGCAACAAGAAGAGGAAGAAAGAAAGCGAATTCGCCGGGAAAAGAAAAAGGAAAAGAAGGAGAAGGCAGTGGAAGAACCTGAAATCGATCCTGACGTTGCTGCCATGATGGGGTTTGGTGGCTTCGGATCATCCAAGAAATAA 606 0.4571 MSHTSNNVAGVDNTFRRKFDREEYLERARERERQEEENRSKPKAKGPLVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLQQVQERFEVLKKRKDLGSFTEQDLDERILKQQQEEEERKRIRREKKKEKKEKAVEEPEIDPDVAAMMGFGGFGSSKK* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03912 201 Pfam Zinc-finger of C2H2 type 85 109 - -
Rops8g03912 201 SUPERFAMILY beta-beta-alpha zinc fingers 80 122 IPR036236 -
Rops8g03912 201 Coils Coil 148 180 - -
Rops8g03912 201 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Rops8g03912 201 MobiDBLite consensus disorder prediction 156 183 - -
Rops8g03912 201 Gene3D Classic Zinc Finger 79 117 - -
Rops8g03912 201 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 10 201 IPR040107 GO:0000398|GO:0005681
Rops8g03912 201 FunFam zinc finger matrin-type protein 2-like 79 117 - -
Rops8g03912 201 MobiDBLite consensus disorder prediction 27 44 - -
Rops8g03912 201 MobiDBLite consensus disorder prediction 156 201 - -
Rops8g03912 201 MobiDBLite consensus disorder prediction 27 55 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03912 4 147 C2H2 Transcription Factor Family AT3G05760 80.556 3.05e-83 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops8g03912 zf-C2H2_jaz 1.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03912 K12848 - gmx:100527057 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03912 8 80135034 80138778 Rops8g03912 8 80135034 80138778 ECH