Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03907 ATGGTTTGCCAGGAAGAGTTGCTGATTGAAAGAGTCTGCGAGCTTTATGAACAAATCTCAAGCCTCGAGTCTCTCAAACCCTGCAAAAATGTCGACATGCTTTTCACCCAACTTGTCCTCACATGCATGCCACCTAGCCCCATAGATGTCACCAAGCTTTCCAAAACTGTGCAAGAAATCAGATCTCATCTTATAAGGCTTTGTGGTGAAGCTGAAGGGTATTTAGAGACCCACTACTCAACCATCCTAGGCTCATATGATAACCCACTTGATCATCTTCATATTTTCCCCTATTATTCTAATTACCTCAAGCTTGGTCTCCTTGAGTACACTATCCTTAGCCAACACTGCACCCATGTCCCTAACAAAATTGCTTTCGTGGGTTCAGGACCCCTTCCTCTTACATCAATTGTCTTGGCATCAAATCACTTACCTTCCACCATTTTCCACAACTATGACATCGACCCTTTAGCCAATTCCAATGCTCAGAGCTTGGTTTCCTCTGACCCTGACTTGTCAAAGCGTATGGTTTTTCACACCAATGATATATTGGATGTGTCAAACGCTTTGAAAGACTATGAAGTTGTTTACTTGGCTGCCCTTGTGGGTATGGACAAGGAGGAAAAGAATCGAATCATTGATCACTTGGCAAAGTACATGGCCCCAGGTGCCCTTCTTATGCTAAGGAGTGCTCATGGGGCTCGTGCTTTTCTCTACCCTGTTGTTGATCCTTGTGATCTTCAAGGCTTTGAGGTCCTCTCTGTGTTCCATCCCATGGATGAGGTTATCAATTCAGTTGTCATAGCGCGTAAATATCCTACGCCTAGACACTCTCTTGAGCAAGGTCTTGGTTCTATGATCCTACCAAACAAGTGTTCTGAGATCCAAGTCTTCAACCCCCTTAACCATGGGAATATGATTGAGGAATTGACCATTGAGGAGCAACATTCTTAA 954 0.4392 MVCQEELLIERVCELYEQISSLESLKPCKNVDMLFTQLVLTCMPPSPIDVTKLSKTVQEIRSHLIRLCGEAEGYLETHYSTILGSYDNPLDHLHIFPYYSNYLKLGLLEYTILSQHCTHVPNKIAFVGSGPLPLTSIVLASNHLPSTIFHNYDIDPLANSNAQSLVSSDPDLSKRMVFHTNDILDVSNALKDYEVVYLAALVGMDKEEKNRIIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPCDLQGFEVLSVFHPMDEVINSVVIARKYPTPRHSLEQGLGSMILPNKCSEIQVFNPLNHGNMIEELTIEEQHS* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03907 317 Gene3D Vaccinia Virus protein VP39 6 273 IPR029063 -
Rops8g03907 317 Pfam Nicotianamine synthase protein 5 273 IPR004298 GO:0030410|GO:0030418
Rops8g03907 317 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410|GO:0030418
Rops8g03907 317 PANTHER NICOTIANAMINE SYNTHASE 3 4 294 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03907 Rops-Chr8 80077287 80078397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03907 1 314 Nicotianamine Synthase Gene Family AT5G04950 61.250 2.11e-140 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03907 K05953 - gmx:100803630 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03907 8 80077287 80078397 Rops8g03907 8 80077287 80078397 ECH