Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03906 ATGGCAGAAGCTTATAGGTTGAAACCTCTTTTTTCTGCTACCACTTCTGAACTGCATCTGGGATCAGTGGCTAATAGTTATCTCCAGCTGGAAGCTCCTCATGAACAGAATGTAACCGGGTCCGATATATCGGATCGATTGATCAAGATCCAGATCGCCAATCATCCTCTTTATCCAGATTTAGTGTCTGCATACATAGAATGCCAAAAGGTTGGAGCATCACCAGAACTGGCATCCCTTCTTGAAGAAATAGGCCGAGAAAGCCACTCCATGAATGCTCGCCGTGAGATAGGGCATGGTCCTGAACTTGACGAGTTTATGGAATCATACTGCGAAGTTCTTCATCGATACAAAGCGGAGTTGTCCAAGCCCTTCAATGAAGCGACTTTGTTTTTGGATTACATGGAATCACAACTCAGCAATCTTTGTGAGGGAACACTAACAAAGTCAGCGGATAACAATCGCTCGGATGAGGTAGCTGTGGATTCAGAGGAGGAATTAAGTTGTGGGGAGATAGAAGCAGTTGAAGGTGATGAATATGCTGTTACTCGCCCAGGTGATAAAAAGCTTAAAGAAATGCTCCTTCGTAAGTACAGTGGCCATTTTGGCAATTTGAGAAAGGAATTTCTGAAAAGAAGGAAAAAGGGTAAGCTGCCAAAGGATGCAAGGTTGGCTTTGATGGACTGGTGGAACACTCATCATAGATGGCCATATCCTACGGAGGAGGAGAAAGTGAAGTTATCAGACATTACAGGACTGGATCAAAAGCAGATCAATAATTGGTTCATCAATCAGAGAAAACGGCATTGGAAACCAACTGAGGATATGCGATTTACCTTTATGGATGGGGTAAGTGATAGCAGCATAAGAGGACCTGTCTTTTTTTAG 888 0.4336 MAEAYRLKPLFSATTSELHLGSVANSYLQLEAPHEQNVTGSDISDRLIKIQIANHPLYPDLVSAYIECQKVGASPELASLLEEIGRESHSMNARREIGHGPELDEFMESYCEVLHRYKAELSKPFNEATLFLDYMESQLSNLCEGTLTKSADNNRSDEVAVDSEEELSCGEIEAVEGDEYAVTRPGDKKLKEMLLRKYSGHFGNLRKEFLKRRKKGKLPKDARLALMDWWNTHHRWPYPTEEEKVKLSDITGLDQKQINNWFINQRKRHWKPTEDMRFTFMDGVSDSSIRGPVFF* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03906 295 SMART KNOX1_2 46 90 IPR005540 GO:0003677|GO:0005634
Rops8g03906 295 CDD homeodomain 212 272 IPR001356 GO:0003677
Rops8g03906 295 SMART ELK_2 189 210 IPR005539 GO:0003677
Rops8g03906 295 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 64 280 - -
Rops8g03906 295 SMART HOX_1 211 276 IPR001356 GO:0003677
Rops8g03906 295 ProSiteProfiles ELK domain profile. 189 209 IPR005539 GO:0003677
Rops8g03906 295 Pfam KNOX2 domain 97 143 IPR005541 GO:0003677|GO:0005634
Rops8g03906 295 ProSiteProfiles 'Homeobox' domain profile. 209 272 IPR001356 GO:0003677
Rops8g03906 295 Pfam KNOX1 domain 48 89 IPR005540 GO:0003677|GO:0005634
Rops8g03906 295 Pfam ELK domain 190 210 IPR005539 GO:0003677
Rops8g03906 295 SMART KNOX2_2 93 144 IPR005541 GO:0003677|GO:0005634
Rops8g03906 295 ProSitePatterns 'Homeobox' domain signature. 247 270 IPR017970 GO:0000981|GO:0006355
Rops8g03906 295 Pfam Homeobox KN domain 229 268 IPR008422 GO:0003677|GO:0006355
Rops8g03906 295 Gene3D - 207 279 - -
Rops8g03906 295 SUPERFAMILY Homeodomain-like 211 283 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03906 Rops-Chr8 80032549 80039187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03906 20 287 Homeobox Transcription Factor Family AT1G23380 52.347 8.63e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Rops8g03906 KNOX2 1.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03906 - - gmx:100803095 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03906 8 80032549 80039187 Rops8g03906 8 80032549 80039187 ECH