Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03888 ATGGCTAGTGGGCTTATTCCATTATTCATAATGGTTCTTGTGCAATTGGCCTATGCAGGGATGAATATCACCTCAAAGCTTGCAATTCAATCTGGCATGAACCCTCTTATCCTTGTTGCTTACCGGCAAATCTTTGCCACTGCATCCATTGTTCCCTTCGCTTATTGGCTGGAATGGAAGAGGGTTCCCAAGATGACAAAGGGCATTATGTTCCAGATATTACTATCCTCCTTAACAGGAGTCACAGGAAACCAGGTTCTGTATTTCGTGGGGCTTAAATATTCAACCGCTACAATTGCATGTGCACTGAACAATTTGCTCCCAGCTTTCACTTTTGTCCTTGCACTCATCTTCAGACAAGAGCATTTGAGAATCAAGAAGATGGCCGGCATAGCAAAGGTGATAGGGACAATATTGTGTGTGGGTGGAGCCGTGCTTTTATCATTCTACCATGGAAAATCCATTGGTTTAGGAGAATCAAGCATTCACTGGAGATATGCACAGAAAATGGAAGGAACCGCTAGCTCCTCTGGCAAAACAAACTTGCTTCTTGGCCCTTTTGCCGTAATTGCTAGTGCTCTTGTTTGGTCAGCATGGTTCATAATTCAAGCTGACATTAACAAGAAGTTTCCAGTTCCTTATACGAGCACCGGATACATGTGTTTTTTGGCAAGCTTTCAATGTGTGATCATTGCCTTGTGTTTTGAGCACAGGGCCTCAGCTTGGTCCCTCCACGATCCCATGAGACTCACCGCTTCTCTTTATGCGGGAGTAATTTGCACTGGGCTATGTTATTGCATCATTTCGTGGACCATTGAGAGGAAAGGTCCTCTTTATGTCTCTGTATTTACCCCTTTGCAGCTTGTCCTCACAGCTATTGTAAGCTGGGCTTTGCTTCAGGAGAAATTATACTTGGGAACTGCCATGGGGTCTCTCCTTATAGTTGTGGGGCTCTATTCTGTTCTGTGGGGAAAGGGAAAAGAGGAGAATAAGAAAGAGGATATTGAAGTGACAGTGATAGAAGCAATGAAGGATAACAAGAAGGATGTGAAGAATGACCTGGAATTGCAACCCTATATGCCATCCAATGGCGAGCTTCTTCGCGGATCTGCACTCTCAACTTCACTGATCTGCTTCTCCCTTTGA 1146 0.4433 MASGLIPLFIMVLVQLAYAGMNITSKLAIQSGMNPLILVAYRQIFATASIVPFAYWLEWKRVPKMTKGIMFQILLSSLTGVTGNQVLYFVGLKYSTATIACALNNLLPAFTFVLALIFRQEHLRIKKMAGIAKVIGTILCVGGAVLLSFYHGKSIGLGESSIHWRYAQKMEGTASSSGKTNLLLGPFAVIASALVWSAWFIIQADINKKFPVPYTSTGYMCFLASFQCVIIALCFEHRASAWSLHDPMRLTASLYAGVICTGLCYCIISWTIERKGPLYVSVFTPLQLVLTAIVSWALLQEKLYLGTAMGSLLIVVGLYSVLWGKGKEENKKEDIEVTVIEAMKDNKKDVKNDLELQPYMPSNGELLRGSALSTSLICFSL* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03888 381 PANTHER WAT1-RELATED PROTEIN 7 333 IPR030184 GO:0016020|GO:0022857
Rops8g03888 381 Pfam EamA-like transporter family 7 141 IPR000620 GO:0016020
Rops8g03888 381 Pfam EamA-like transporter family 184 322 IPR000620 GO:0016020
Rops8g03888 381 SUPERFAMILY Multidrug resistance efflux transporter EmrE 41 141 - -
Rops8g03888 381 SUPERFAMILY Multidrug resistance efflux transporter EmrE 222 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03888 Rops-Chr8 79843671 79849452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03888 3 375 Nodulin-like Gene Family AT1G09380 56.032 4.73e-145 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03888 - - gmx:100798142 558.525