LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g03883	ATGGCTTCGGTTGGCGTGGCACCAACATCAGGCTTGAGAGAATCCAGTGGTGTTGATAGATTGCCAGAGGAGATGAATGATATGAAAATTAGAGATGATAAAGAAATGGAAGCCACTGTTGTTGATGGTCATGGAACAGAGACAGGGCATATCATTGTAACTACTATTGGAGGTGGAAATGGTCAGCCCAAGCAGACTATAAGCTATATGGCAGAGCGGGTTGTTGGGCATGGATCATTTGGGGTTGTCTTCCAGGCTAAATGCTTGGAGACTGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGACAAGAGGTATAAAAACCGGGAGCTGCAAACAATGCGTCTTCTTGACCACCCAAATGTTGTCTCTTTGAAGCATTGTTTCTTTTCAACCACTGAAAAAGATGAACTATACCTTAATTTGGTACTTGAGTATGTTCCTGAAACAGTTCATCGCGTGATCAAACATTACAACAAGTTGAACCAACGCATGCCACTGATATATGTGAAACTCTATACATACCAGATCTTTAGGGCACTATCTTATATCCATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTAGTTAATCCACATACCCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAAGTCTTGGTAAAAGGCGAACCAAATATCTCGTACATATGTTCTAGATATTATAGAGCACCTGAACTTATATTTGGAGCAACTGAATATACTACAGCTATTGACATTTGGTCTGTAGGTTGTGTATTGGCTGAGCTTCTGCTTGGACAGCCTTTGTTCCCTGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATCAAGGTTCTGGGTACTCCTACAAGGGAAGAGATTAAGTGCATGAACCCTAACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGATCTTTCATAAGCGCATGCCACCAGAAGCTGGTGATTTGGTATCAAGACTACTGCAATACTCCCCTAACCTGCGGTGCACAGCTTTAGATGCCTTGACCCATCCCTTCTTTGATGAACTTCGTGACCCAAACACTCGCTTGCCAAATGGTCGTTTCCTTCCACCATTATTCAATTTCAAATCTCATGAACTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGATTCCAGAGCATGCGAGGAAGCAATGTTCGTTTCTTGGCTTGTGA	1218	0.4204	MASVGVAPTSGLRESSGVDRLPEEMNDMKIRDDKEMEATVVDGHGTETGHIIVTTIGGGNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHYNKLNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAGDLVSRLLQYSPNLRCTALDALTHPFFDELRDPNTRLPNGRFLPPLFNFKSHELKGVPVEILVKLIPEHARKQCSFLGL*	406

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Rops8g03883	405	SMART	serkin_6	69	353	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Rops8g03883	405	Gene3D	Transferase(Phosphotransferase) domain 1	149	397	-	-
Rops8g03883	405	CDD	STKc_GSK3	64	356	IPR039192	-
Rops8g03883	405	ProSitePatterns	Protein kinases ATP-binding region signature.	75	99	IPR017441	GO:0005524
Rops8g03883	405	Gene3D	Phosphorylase Kinase; domain 1	54	148	-	-
Rops8g03883	405	Pfam	Protein kinase domain	69	353	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Rops8g03883	405	ProSiteProfiles	Protein kinase domain profile.	69	353	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Rops8g03883	405	MobiDBLite	consensus disorder prediction	1	22	-	-
Rops8g03883	405	SUPERFAMILY	Protein kinase-like (PK-like)	68	379	IPR011009	-
Rops8g03883	405	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	190	202	IPR008271	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops8g03883	Rops-Chr8	79781962	79786758	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops8g03883	75	381	MAP Kinase Gene Family	AT2G43790	35.110	3.98e-55	185

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Rops8g03883		Pkinase	1.1e-64	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g03883	K00924		-	gmx:100795659	789.645

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