Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03877 ATGGGTTCTAATCTTAATGCTGAATTATCCAAGAAAACTCCCATTTTTGGTATCAAGGTTTGGGAAATAATTGCAATTGTAGTTGGATTGACAATTATAGTCATCCTCTCTGTACTCTCACTTTGCCTTACTTCAAGAAAGAAATCTAGAAAAGCCAAGGATAAGATTCCTCTTAGTCAGATACCAACTGTCTCAAAGGAAATCAAGGAAGTGCGGGTTGAGCAAGTATCAACAAATGGATTTGCTCCACGTGATGGAATACTTCTTACAATTCATGATAAATCCAGTGACAAGGAATCAGATAAAGTCATGGTTCATTTAGGTATGGGGAAGATGAAGAATGGTGATAGTAGCAGTCATTCAGATTCATTTCACCATTTAGAGAAAGATGGAGGTGGTTCATACTCACAATCAGGAGAAGAAGGTAGCTCTGGCACGGTTACAGTGTATAAACATTCTTCTTCATACCCTATAACAGCTCCTTCACCTCTGTCTGGCCTTCCTGAGTTCTCTCACTTGGGTTGGGGTCACTGGTTTACCTTGAGGGATCTTGAACTTGCTACAAACCGTTTTGCCAAAGAAAATGTTCTTGGTGAAGGTGGGTATGGAATTGTTTATAGGGGACAGTTGATCAATGGGACTCCTGTTGCAGTTAAAAAGATACTCAATAATATTGGTCAAGCAGAGAAAGAATTTGGAGTGGAAGTTGAAGCTATTGGCCATGTTAGACACAAAAACTTGGTTCGCCTTTTGGGGTACTGCATTGAGGGAACTCACAGGATGTTAGTCTATGAGTATGTCAATAATGGAAACTTGGAGCAATGGCTTCATGGAGCTATGCGTCACCATGGATATCTTACCTGGGAAGCACGTATCAAGATTCTCCTTGGCACAGCCAAAGCGCTTGCATATTTGCATGAAGCAATTGAGCCAAAGGTGGTACACCGAGATATCAAGTCAAGCAACATATTAATTGATGATGACTTCAATGCCAAAGTTTCTGATTTTGGCCTGGCCAAGCTATTGGGTGCTGGGAAGAGTCATGTCACAACGCGGGTTATGGGAACCTTTGGATATGTGGCTCCTGAATATGCGAATACTGGCCTTCTAAATGAGAAGAGCGACGTTTATAGCTTTGGTGTTTTGCTTTTGGAAGGAATAACTGGAAGAGATCCAGTTGACTATGGTCGTCCAACCCATGAAGTGAATCTAGTTGATTGGTTGAAGATGATGGTTGGAAAGAGGAGGTCAGAAGAAGTGGTGGACCCAAATATTGAGGCGAAGCCATCAACCAGAGCTTTAAAGCGGGCTCTCTTAACTGCTTTAAGATGTGTAGATCCAGATTCTGAGAAGAGGCCCAAGATGAGCCAAGTTGTTCGTATGCTGGAGTCAGAGGAATATCCTTTACCAAGAGAGGATCGAAGGCACCAGAGAAGAAATCATGGAGGAAGTGCAGAAATTGAATCTGGGAGGGAATATTCTGATACAGACAGGAGTGAGATTCAGGGTTCTAGAGAAGAGAGCAGAGGGTAA 1533 0.422 MGSNLNAELSKKTPIFGIKVWEIIAIVVGLTIIVILSVLSLCLTSRKKSRKAKDKIPLSQIPTVSKEIKEVRVEQVSTNGFAPRDGILLTIHDKSSDKESDKVMVHLGMGKMKNGDSSSHSDSFHHLEKDGGGSYSQSGEEGSSGTVTVYKHSSSYPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFAKENVLGEGGYGIVYRGQLINGTPVAVKKILNNIGQAEKEFGVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLEGITGRDPVDYGRPTHEVNLVDWLKMMVGKRRSEEVVDPNIEAKPSTRALKRALLTALRCVDPDSEKRPKMSQVVRMLESEEYPLPREDRRHQRRNHGGSAEIESGREYSDTDRSEIQGSREESRG* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03877 510 CDD STKc_IRAK 197 463 - -
Rops8g03877 510 SMART serkin_6 191 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03877 510 FunFam Putative receptor-like protein kinase 173 266 - -
Rops8g03877 510 MobiDBLite consensus disorder prediction 111 147 - -
Rops8g03877 510 Pfam Protein kinase domain 192 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03877 510 ProSiteProfiles Protein kinase domain profile. 191 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03877 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 313 325 IPR008271 GO:0004672|GO:0006468
Rops8g03877 510 PANTHER OS01G0323000 PROTEIN 4 481 - -
Rops8g03877 510 ProSitePatterns Protein kinases ATP-binding region signature. 197 220 IPR017441 GO:0005524
Rops8g03877 510 MobiDBLite consensus disorder prediction 449 510 - -
Rops8g03877 510 Gene3D Phosphorylase Kinase; domain 1 173 266 - -
Rops8g03877 510 FunFam Putative receptor-like serine/threonine-protein kinase 267 478 - -
Rops8g03877 510 Gene3D Transferase(Phosphotransferase) domain 1 267 478 - -
Rops8g03877 510 SUPERFAMILY Protein kinase-like (PK-like) 175 470 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03877 Rops-Chr8 79719448 79723995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03877 27 465 Trihelix Transcription Factor Family AT1G70460 40.000 3.81e-92 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Rops8g03877 Pkinase 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03877 - - gmx:100787014 894.034