Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03874 ATGGGCGGAGGTGGAGCAACGCCGAACGCGGAATCGCAATACTCGACGGCGAAGATATCGGTGTGGTGGGACATAGAGAACTGTCATGTCCCTAAGGGTTCCGATCCACACGCCATCGCTCAGAATATCAGTTCAGCACTGGTTCGTATGAACTACTGTGGGCCCGTTTCCATCTCCGCCTACGGTGACACCACTCGCATCACAGCATCTGTACAGCACGCTCTCTCCAGCACCGGAATCTCCCTCAACCATGTCCCTGCCGGTGTGAAAGATGCAAGTGACAAAAAGATCCTTGTAGACATGCTGTTCTGGGCAGTGGACAATCCTGCACCTGCTAATTATTTATTGATTTCGGGTGATCGAGACTTCTCTAACGCTCTCCATCAACTGCGGATGAGGAGATATAATATTCTTCTTGCACAACCTCAGAAAGCATCTGCACCCCTAGTGGCAGCTGCTAAGAGTGTATGGCTTTGGACTAGTCTCTTAGCTGGAGGACCTCCTTTAACTAATGGTGAATCGCAACAACTTGGTAATAATAGCCACTTATCAACTGCTGACACCTTACAAATTCCAGTCACAAATGCCGTGCCGTTACACCAACAGGTGGATTCCTATTCTGAAGTTCATGCAGGAAATTCAAAATTTTCAAATGGAGGACGAGGATTTGATTCTAGATATCAGGGGAAACCAAATTGGAGAAACCCCAGCCAACCAAATGGACCCAAAGCCATGAATCCAACACAAGCTGGATTTCAAGATAATCGTAATAATATAAACTCTTATCGACCTGGCAATTATAATCCAAATGTTCCCCTAAGCGGATCTACTACAAATTTTGCTCGAGGCAATACTGATCAGTTATGGAGCAATAATGGTAATCTACAGGGCAATCATCAAAATTCTTATTCCCAACCATTAAGGCCAAACAATTTTCCATTGCAGCCTCCTTTTGCACCTTCTAATACACATACTTCAAATTCCCATACTTTTGCAACTTCATCGGTGCCACCTAGGACTGGTGGTCCCAACTTCACTACAGGGCTACTTACAAACATGCCAGACATTGGTAATCTGAACATGTCTAGATATCCCAATGCTGTTCATAACCCTCGTACTACTCCACAACGGAGTGGAGAGTTGAAACAGAATCCTAACAGTAATGCTCCACTTCCTTTAAGATCAACTGATGAACAAAATGGACATATGTCACACAGCAGTAGCACACAAGGCTATCCACACGGTCCAGAATATCAACCTACACCTTTGGCCCCAACGGGTAATAATAACATTCCTGGTAATGGCACGTGGGGATCTCCAGGATGTTCTAAACCTTCCGAATATGTACAAGGCCTTATAGGGGTTGTATTACTTGCCTTGAACTCACTAAAAATTGAAAAGATGATGCCAACTGAGGCAAATATAACTGATTGCATCCATTATGGAGATCCCAAGCACCGCAACACTGATGTTAAGAAGGCTCTGGAGAGTGCTATTGAGCAGCAGATGGTGGTGAAACAGAATCTAGGAGCTTTGCCATTGTATGTTGGTAAGAATGATAAACTTTGGAAGTGTGTAAATCCTTTGGGTGGGAATCCTAAGCAGCACTCAAAAAAAACATGGGATGAAATTCAAAATTTTTTATCAACTTCTGCTGGAAGATTGGCACTAATGGGTACACAGTGCAAGTATGAAGCAGGTCTTGTGATAAAGAAGATGTGCTTTAAAGATCTTGCTTTGGGCGATGTCCTTCAGATATTGAACTTGTTGATTATCCATAAAAAATGGATTGTGACTCATCAGTCTGGCTGGCAACCACTTATCATTACTCTGCCTGAGACAAATCCTGATTCAGGGGATGTAGCTGGCGCATAA 1875 0.4384 MGGGGATPNAESQYSTAKISVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISAYGDTTRITASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLTNGESQQLGNNSHLSTADTLQIPVTNAVPLHQQVDSYSEVHAGNSKFSNGGRGFDSRYQGKPNWRNPSQPNGPKAMNPTQAGFQDNRNNINSYRPGNYNPNVPLSGSTTNFARGNTDQLWSNNGNLQGNHQNSYSQPLRPNNFPLQPPFAPSNTHTSNSHTFATSSVPPRTGGPNFTTGLLTNMPDIGNLNMSRYPNAVHNPRTTPQRSGELKQNPNSNAPLPLRSTDEQNGHMSHSSSTQGYPHGPEYQPTPLAPTGNNNIPGNGTWGSPGCSKPSEYVQGLIGVVLLALNSLKIEKMMPTEANITDCIHYGDPKHRNTDVKKALESAIEQQMVVKQNLGALPLYVGKNDKLWKCVNPLGGNPKQHSKKTWDEIQNFLSTSAGRLALMGTQCKYEAGLVIKKMCFKDLALGDVLQILNLLIIHKKWIVTHQSGWQPLIITLPETNPDSGDVAGA* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03874 624 Gene3D - 9 161 - -
Rops8g03874 624 MobiDBLite consensus disorder prediction 230 309 - -
Rops8g03874 624 MobiDBLite consensus disorder prediction 210 439 - -
Rops8g03874 624 CDD PIN_limkain_b1_N_like 18 142 - -
Rops8g03874 624 Pfam NYN domain 18 154 IPR021139 GO:0004540
Rops8g03874 624 PANTHER LIMKAIN B LKAP 14 506 IPR024768 GO:0005777|GO:0010468
Rops8g03874 624 MobiDBLite consensus disorder prediction 422 439 - -
Rops8g03874 624 MobiDBLite consensus disorder prediction 317 415 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03874 10 215 C2H2 Transcription Factor Family AT5G61190 66.827 1.08e-82 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03874 - - gmx:100794608 1095.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03874 8 79650866 79654999 Rops8g03874 8 79650866 79654999 ECH