Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03862 ATGCCTCTGCATGAGTTATACCGCATGGCTAAAGGGAAGGTTGATCATAAAGAGATCAACAACACATGTGCTGCTGATCAATCCTCAGTACGCAAGAATGATTTGCTTGAGCTGGTTTGGGAAAATGGCCAGATTTCAATGCAGGGCCAATCCAGTTCCAGTAGAGCTACTAGAAAGAGCCCAACTTATAAGAGTTTGTCATCTCATTACTTACCACCTCACAGTCCCAAGAGTCAAGATAAAGAATTAGGATATGCTAATGAAACCAATACAAGGATGGGGAAGTTTGGGGATTTAGATACTGGATTGAATGAAATTACAAGGCCTGTCCCTTCAAATGAAGTGAACTTAAGTCAAGACAAAGACATGATGATACCTTGGTTGAATTATGGAATGGATGACTCTTTGCACCATGAATATAGTTCTGGTTTCTTACATGAACTATCTGGGGTCACCATGAATGACTTCCCTGCCTTAAATAAATTTTCTTTTCTAGATAGGAGAAGTAATTGTAATCAGGTATTTAGGGACTCTCATAAACACTCTCCATGTAATGTTTTAGCTTCGGAACAATGGATCCTTTCCAAGGGCTCTTCAGCTGCAGCTGGAGAAGTTCAGAGCCACGGACCTAAAGCTAGCACCAGTCAGTTATACCCTCCATCATTGTTGCACCAATGTCACACATCATTTGCATCTGTGAGATCCAGAGAATCAGATATAGCTGAAAACAATACAAGTAATGCAAACCAGAATCCACCTTGTGGAGAAATCACTCAGATTCCATCTGCTTCAGGTGGCTTTTCTAGCTTAAAGATGGAGAGGCAAGATCCAATGATGTCTAGCAATAGTTCCACCATAATGAATTTCTCCCACTTTGCAAAACCGGCTGCTATTGTGAAAGCTAATCTTCATAGCATTGGTTTTTCGTCTGGTTTGTCTTCATCAAGATCAGAAAGTGTGGAAATAAAGAATAAAGGTGCTGCTGCAACTAGAAGCAATCCTCCTGAATCAACAAAAGTTGATTTAAGTAGTGAATGTCCAAAGAAATCAGACATAAACATTCAGCAGGTTATGGAGACATCGAAGGTTGATTTGAAACTGTTGGAGCCAAAATCTCTTGAGCAGGATGCTGCTGTTACTACCAAGTCTGACCCTGCTTGCAAAGATGGGTCTAAGATTGATCAAACTTCTAATCAAGTTGTTGGTGAAAGTGGCAGAAAAGGTCCAGAAGCTGTTGAAAAAAATATGGAGCCAGCAGTAGTCTCTTCCTCTGTTTGCTCTGGCAATGGTGCAGAGAGAGGTTCAGACGATCAAAATCAAAATTTGAAGCGAAAAACTGGAGATACTGAGGACTCTGAGTGCCACAGTGAAGATGTTGAGGAAGAATCAGTAGGTGTTAAAAAGGTAGCTCGTGCACGAGGGGGTATGGGTTCCAAGAGAAACCGTTCAGCCGAAGTGCATAATCTATCTGAAAGGAGACGAAGAGACAGGATCAACGAGAAGATGCGTGCATTACAAGAACTCATACCAAATTGCAATAAGGTGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAACTCCAACTTCAAGTTATGTCAATGGGATGTAGTTTATATATGCCTACGATGATGTTACCTGCAGGAATGCAGCACATGCATGCACCACACATGTCTCCTTTTTCACCTATGGGTGTTGGCATGCAAATGGGGTTGGGAGTGGGTTATGGAATGGGCATGCCTGAAGTTAATGATGGATCTTCTAGATTCCCAATGGTTCAGTTTCCCCAAATGCAAGGAACTCATCTTCCTGTTCCAAATACTTCTGGACATGGGATGGCAAGATCAAATCCTCAATTATTTGGGCTTCCGGGTCAGGGACTCTCCACATCAGTGCCATGTGCTTCTTTTCCAGGAGAGCCTCTCATGAGCCCATCAGCTCTAGGACTAAATGCCTGTGGAACAGCTGGACTTGTGAAAACCGTGGAACCGGCTTTAGCCTCTAGCTTAAAAGATCCTATGCCAAATGTGAACTCACAAGTTATGCAAAACACTAAAGGCTGTAACTTAGCAAATCCGCAGTGTGAAGCAACAACTGGTGGATTCGAACCCTCAACTTTGGTACATAATAGTGGTCATGCCTCTTCGGCAAATGACAGAGGAGCTGTTGATTCCAATAAAGAAGATAATCTTGTTATGATTGATGTACCACATAATGAAAAGAATCTTAAGGCCCGATTTCAATCTAGAGTACTACATTACAGAGGATACTTGAAGTTCATGGAGGTTGAGCTGTCACAGTGA 2319 0.4196 MPLHELYRMAKGKVDHKEINNTCAADQSSVRKNDLLELVWENGQISMQGQSSSSRATRKSPTYKSLSSHYLPPHSPKSQDKELGYANETNTRMGKFGDLDTGLNEITRPVPSNEVNLSQDKDMMIPWLNYGMDDSLHHEYSSGFLHELSGVTMNDFPALNKFSFLDRRSNCNQVFRDSHKHSPCNVLASEQWILSKGSSAAAGEVQSHGPKASTSQLYPPSLLHQCHTSFASVRSRESDIAENNTSNANQNPPCGEITQIPSASGGFSSLKMERQDPMMSSNSSTIMNFSHFAKPAAIVKANLHSIGFSSGLSSSRSESVEIKNKGAAATRSNPPESTKVDLSSECPKKSDINIQQVMETSKVDLKLLEPKSLEQDAAVTTKSDPACKDGSKIDQTSNQVVGESGRKGPEAVEKNMEPAVVSSSVCSGNGAERGSDDQNQNLKRKTGDTEDSECHSEDVEEESVGVKKVARARGGMGSKRNRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQLQVMSMGCSLYMPTMMLPAGMQHMHAPHMSPFSPMGVGMQMGLGVGYGMGMPEVNDGSSRFPMVQFPQMQGTHLPVPNTSGHGMARSNPQLFGLPGQGLSTSVPCASFPGEPLMSPSALGLNACGTAGLVKTVEPALASSLKDPMPNVNSQVMQNTKGCNLANPQCEATTGGFEPSTLVHNSGHASSANDRGAVDSNKEDNLVMIDVPHNEKNLKARFQSRVLHYRGYLKFMEVELSQ* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03862 772 MobiDBLite consensus disorder prediction 234 282 - -
Rops8g03862 772 MobiDBLite consensus disorder prediction 437 452 - -
Rops8g03862 772 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 482 531 IPR011598 GO:0046983
Rops8g03862 772 Gene3D - 477 540 IPR036638 GO:0046983
Rops8g03862 772 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 479 545 IPR036638 GO:0046983
Rops8g03862 772 SMART finulus 488 537 IPR011598 GO:0046983
Rops8g03862 772 PANTHER TRANSCRIPTION FACTOR PIF3 1 693 IPR044273 GO:0003700|GO:0006355
Rops8g03862 772 MobiDBLite consensus disorder prediction 420 436 - -
Rops8g03862 772 CDD bHLH_AtPIF_like 482 544 IPR047265 -
Rops8g03862 772 MobiDBLite consensus disorder prediction 46 82 - -
Rops8g03862 772 Pfam Helix-loop-helix DNA-binding domain 486 532 IPR011598 GO:0046983
Rops8g03862 772 FunFam Basic helix-loop-helix transcription factor 477 540 - -
Rops8g03862 772 MobiDBLite consensus disorder prediction 478 495 - -
Rops8g03862 772 MobiDBLite consensus disorder prediction 46 74 - -
Rops8g03862 772 MobiDBLite consensus disorder prediction 376 495 - -
Rops8g03862 772 MobiDBLite consensus disorder prediction 323 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03862 Rops-Chr8 79463834 79468783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03862 1 618 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 34.639 1.43e-73 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops8g03862 HLH 6.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03862 K12126 - gmx:100794974 824.313