Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03860 ATGGGAAGACACTCTTGCTGCTACAAGCAGAAGCTTCGTAAAGGCCTCTGGTCTCCAGAGGAAGATGAGAAGCTTCTGAATTATATCACCAAACATGGCCATGGATGTTGGAGCTCGGTTCCAAAACTAGCTGGTTTGCAAAGGTGTGGTAAGAGCTGCAGATTGAGATGGATAAATTACCTGAGGCCTGATTTGAAGAGAGGAGCATTCTCACAACAGGAAGAGAATTCGATAATTGAACTTCATGCAGTTCTTGGAAACAGGTGGTCTCAGATTGCAGCTCAGTTACCTGGAAGAACTGACAATGAGATAAAAAATCTATGGAATTCTTGCCTCAAGAAGAAGCTTAGGCAAAGAGGCATTGACCCAAACACCCACCAACCTCTCTCTGAGGTTGAGACTAACAAGGACAAGCCACCCATAGCTGACAAAAGCAATCAGAAAGCCTCTATGGGATCCAATGAGGTGAGTAATAATATTGTTGAACCAGCAAAACCCAAGCCAACTTCTATGCCTATGGAGCGTTATCCCCTTGAAATTTCATCTAGCTCCAAGATCAACAATAACAGCAGCTGTTTAACCAGCACCACCCCACCCACACAGGAATTATTCCTAGAAAGGTTTGGTACCTGTCATGAAAGCTCCATCACTAGTTGCAGACCTTCTGATATGGTGGGATATTTCTCTTTCCAACACCTTAACTATGGACCAAACATGGGCCTCACTGCAAATCCCAACAACTCACTTTGCTTCATACCAGGTTCCACTTCCTCCCAAATGATGTCAGACCTCAATTCTAGTATAAATTCCACTATGCTCCATTCAATTTTCCAAACTCCAAACCCAAAACATGTAAAGCCCACTGTTAGTCTCCACTCTAATAACCATTCCATATCCTCTGGTGATGTTGATGGGGTTCAGAACTGGGAAGTCGGTACCTTCAGTAACAACGCAAGCAAAAGCAATGGGAGCAGTAGCAGCATCCAATTACAAAACAGCACTAACTTCCTTGATAGCACCACTCTAACATGGGGGCTGCAAGAGTCTGCAAAGGCTGATAAAGATTCTCATGTACCCTTACAAGCAGAAGAAGAAGATATTAAATGGTCTGAATATCTTAACACCCCTACCCCTTTCTTTATGGGAAACACATTGCAGCATCAGGGTACCACTCAATCTATCTACAGTGATGAGGTTAAACCAGAAACGGGTTTCATTACGGACGAAAACGAATCAAGTACTAGTTGGCATCACAGCCAGCATTTTCAACCTTCTGATATATATACCAAAGATCTACAGAGATTTTCAGTGGCTTTTGGACAAACCCTTTAG 1332 0.4309 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENSIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHQPLSEVETNKDKPPIADKSNQKASMGSNEVSNNIVEPAKPKPTSMPMERYPLEISSSSKINNNSSCLTSTTPPTQELFLERFGTCHESSITSCRPSDMVGYFSFQHLNYGPNMGLTANPNNSLCFIPGSTSSQMMSDLNSSINSTMLHSIFQTPNPKHVKPTVSLHSNNHSISSGDVDGVQNWEVGTFSNNASKSNGSSSSIQLQNSTNFLDSTTLTWGLQESAKADKDSHVPLQAEEEDIKWSEYLNTPTPFFMGNTLQHQGTTQSIYSDEVKPETGFITDENESSTSWHHSQHFQPSDIYTKDLQRFSVAFGQTL* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03860 443 MobiDBLite consensus disorder prediction 119 173 - -
Rops8g03860 443 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Rops8g03860 443 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Rops8g03860 443 Gene3D - 11 67 - -
Rops8g03860 443 SMART sant 66 114 IPR001005 -
Rops8g03860 443 SMART sant 13 63 IPR001005 -
Rops8g03860 443 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops8g03860 443 FunFam MYB transcription factor 68 140 - -
Rops8g03860 443 CDD SANT 17 61 IPR001005 -
Rops8g03860 443 FunFam Myb transcription factor 11 67 - -
Rops8g03860 443 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Rops8g03860 443 PANTHER MYB DOMAIN PROTEIN 55 1 347 - -
Rops8g03860 443 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Rops8g03860 443 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops8g03860 443 CDD SANT 69 109 IPR001005 -
Rops8g03860 443 Gene3D - 68 148 - -
Rops8g03860 443 MobiDBLite consensus disorder prediction 146 164 - -
Rops8g03860 443 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03860 Rops-Chr8 79443593 79445314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03860 1 443 MYB Transcription Factor Family AT1G09540 46.667 5.89e-118 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g03860 Myb_DNA-binding 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03860 K09422 - gmx:100788976 601.668