Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03856 ATGGTCACACCATCGACAATAGGAAGAGCATTTCACTTGGACTTGCTTGTTACCGAAGTGTCAATCAGATTTTTCCTTGCAAGTGAGGCAGGAGGATGTCATTCGACTAAGTTTATGGTGACAATGTCCTCCTCAAGGCGTAGCCAATCATCCAGCTATAATTCAGGCAGATCGAGACATAGTGCTAGGATTATTGCTCAGACCACTCTAGATGCAAAACTTCATGCAATTTTTGACGAATCCGGTAGTTCCTTTGACTACTCCAATTCAGTGAGATTTTCTTCTGGTACAGGCTCAGCTAGTGTAGACCATCAACCAAGTTCTGATAGAGTGACATCTGCTTATCTCCATCAGATACAGAAAGGGAAGCTGATTCAGCCTTTTGGGTGCTTGCTTGCTTTAGATGAGAAAACATGCAAGGTCATTGCATACAGTGAGAATGCACCTGAAATGCTGACCATGGTTAGTCGTGCTGTTCCCAGTTTTGGTGACCACCCTGCTCTTGGCATTGGCACTGACATAAGATCTATTTTCACCACCCCAAGTGCTTCTGCATTTCAGAAGGCACTAGGATGTGCGGAGGTTTCACTTGTTAACCCCATCCTAGTCCATTGCAAGACCTCTGGAAAGCCTTTATATGCAATTATTCATCGTGTTACTGGTAGTTTGATAGTTGATTTTGAGCCAGTCATGCCTCATGAACATCAAGTTCCCATGACTGCAGCAGGTGCCTTGCAATCTTACAAGATTGCAGCGAAATCAATAACTCGATTGCAATCTTTGCCTAGTGGGAGCATGGAAACGCTCTGTGATGCAATGGTTCAAGAAGTTTTTGAACTCACAGGTTATGACAGAGTGATGGCTTATAAGTTTCATGATGATGATCATGGGGAAGTGATTGCTGAGGTTACAAAGCCAGGCCTAGAGCCATATCTGGGTTTGCACTATCCAGCCACTGATGTTCCCCAGGCTACACGCTTTTTATTAATGAAGAACAAGGTCCGTATGATAGTTGATTGTTGTGCAAATCACGTGAAGGTGCTTCAAGACAAAAATATTCCATTTGATTTAACTTTGTGTGGATCAACCTTAAGGGCTTCTCATAGTTGCCATTTGCAATACATGGAGAACATGAATGTAAGTGCTTCCTTGGTTATGGCAGTTGTGGTCAATGACAATGATGAAGATGGGGATAGCTCTGATGCTGTTCAGCCACAAAAGAGAAAAAGACTCTGGGGTTTAGTAGTTTGCCATCACATTACTCCCAGGTTTGTTCCCTTTCCTCTTAGGTATGCTTGTGAATTTCTGGCTCAAGTATTTGCCATCCATGTGAACAAAGAAATAGAGTTAGAATATCAGACTATTGAGAAGAATATTCTGCGCACCCAAACACTTTTGTGTGATATGCTGATGCGAGATGCACCCCTAGGTATTGTATCACAGAGCCCTAATATAATGGATCTTGTGAAATGTGATGGAGCAGCCCTCTTGTATAAGAACAAGGTACGGAGATTAGGGGTAACACCAAGTGAATCCCAGATACGAGAGATTGCTTTATGGCTCTCTGAGTGCCATAAGGATTCCACAGGTTTGAGTACAGATAGCTTGTCTGATGCAGGGTTCCCAGGGGCTGCTGCTCTTGGTGATATTATATGTGGAATGGCAGCTGTGAGAATAGCTTCCAAAGACTTAGTTTTCTGGTTTCGATCACCCACTGGTGCAGAAATCCGTTGGGGTGGTGCAAAGCATGAACCTGGTGAAAGGGATGATGGTACGAGGATGCATCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGACAAGGAGCTTACCATGGAAGGACTATGAAATGGATGCTATTCATTCACTGCAGCTAATACTGAGAAATTCATTCAAAGATACAGAGAGTATGGATATAAACACATATGCTATCAATACAAGACTAAGTGATTTGAAGATTGAGGGGATGCAAGAACTGGAAGCAATGACAAATGAAATGGTTAGGTTAATTGAAACAGCAACCGTGCCAATATTTGCGGTTGATGTAGACGGGATGGTCAATGGATGGAATACAAAGATTGCTGAGTTGACAGGTCTTCCAGTTGAGGAAGCTATTGGGAAGCATTTACTCACGCTTGTTGAGGATTTTTCAACAGATAAAGTCAAGAAGATGTTGGACATGGCACTGCAGGGTGAAGAAGAGAAGAGTGTCCAATTTGAGATCAAAACACATCATTTGAAGATTGATTCTGGTCCTATCTGCTTGGTAGTTAATGCTTGTGCAAGCAGGGATCTTCAAGACAATGTTGTGGGGGTTTGTTTTGTGGCCCAAGATATAACTGTTCAGAAGACATTCATGGACAAATTCACCCGAATTGAAGGTGATTATAAGGCAATTGTACAGAGCCCAAACCCGTTGATCCCTCCAATATTTGGCACAGATGAATTTGGCTGGTGTTGTGAATGGAATTCAGCTATGGCAAAATTAACTGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTAGGGGAAGTTTTTGGGACCCAGATGGCTGCTTGTCGCCTAAAGAATCAAGAAGCTGTTGTTAATTTTAGCATTGTACTCAATAAAGCCATGACTGGTTTGGAAACCGAGAAGGTTGCTTTCGGTTTCTTTACTCGGAAAAAGAAGTATGTAGAATGCCTGCTTTCTGTGACTGCAAAATTGGATATAGAGGGTGTAGTTACTGGGGTCTTCTGCTTCTTGCAGCTAGCTAGCCCAGAGCTGCAACGAGCATTACATATTCAGCACCTTTCTGAACAAACTGCCTCTAAGAGACTGAAAGCTTTAACTTATATGAAAAGGCAAATCCGGAATCCATTATGTGGGATTATGTTCTCCCAGAAATTGATAGAGGGTACTGAGTTGGGAACTGATCAAAGACAACTTCTGCATACTGGCACTCGGTGCCAACACCAGCTTAGCAAAATTCTGGATGACTCGGATCTTGACAGCATCATTGATGGCTACTTGGATTTGGAGATGGTTGAATTCACTCTGCATGAAGTTTTGGTTGCCTCCCTAAGTCAAGTCATGACAAAGAGTGAAGCAAAGGGTATCCAAGTAGTCAATGATGTTGCAGAGCAGATCACCACAGAAACCTTCTGTGGTGATAGTCTTAGGCTTCAGCAGGTCTTAGCTGACTTTTTATTGATTTCCATCAATTTCACACCAACTGGAGGTCAGGTTGTTGTAGCTGCCTCTTTAACCAAGAACCGGTTAGGGAAATTAGTCCATCTTGCTCATTTGGAGCTTAGCATAACACATGATGGTTTTGGGGTTCCAGAAGCATTGCTGAACCAGATGTTTGGACGTGATGGACATGAATCTGAGGAGGGTATTAGCCTGCTCATCAGCAGAAAGCTGTTAAAGCTCATGAGTGGAGACGTACGTTATATAAGGGAAGCAGGCAAAGCATCTTTCATCTTAACTGTTGAACTTGCCGTGGCCCATAAATTGAGGGCTTAA 3516 0.428 MVTPSTIGRAFHLDLLVTEVSIRFFLASEAGGCHSTKFMVTMSSSRRSQSSSYNSGRSRHSARIIAQTTLDAKLHAIFDESGSSFDYSNSVRFSSGTGSASVDHQPSSDRVTSAYLHQIQKGKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSRAVPSFGDHPALGIGTDIRSIFTTPSASAFQKALGCAEVSLVNPILVHCKTSGKPLYAIIHRVTGSLIVDFEPVMPHEHQVPMTAAGALQSYKIAAKSITRLQSLPSGSMETLCDAMVQEVFELTGYDRVMAYKFHDDDHGEVIAEVTKPGLEPYLGLHYPATDVPQATRFLLMKNKVRMIVDCCANHVKVLQDKNIPFDLTLCGSTLRASHSCHLQYMENMNVSASLVMAVVVNDNDEDGDSSDAVQPQKRKRLWGLVVCHHITPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQTIEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKVRRLGVTPSESQIREIALWLSECHKDSTGLSTDSLSDAGFPGAAALGDIICGMAAVRIASKDLVFWFRSPTGAEIRWGGAKHEPGERDDGTRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSFKDTESMDINTYAINTRLSDLKIEGMQELEAMTNEMVRLIETATVPIFAVDVDGMVNGWNTKIAELTGLPVEEAIGKHLLTLVEDFSTDKVKKMLDMALQGEEEKSVQFEIKTHHLKIDSGPICLVVNACASRDLQDNVVGVCFVAQDITVQKTFMDKFTRIEGDYKAIVQSPNPLIPPIFGTDEFGWCCEWNSAMAKLTGWKREEVMDKMLLGEVFGTQMAACRLKNQEAVVNFSIVLNKAMTGLETEKVAFGFFTRKKKYVECLLSVTAKLDIEGVVTGVFCFLQLASPELQRALHIQHLSEQTASKRLKALTYMKRQIRNPLCGIMFSQKLIEGTELGTDQRQLLHTGTRCQHQLSKILDDSDLDSIIDGYLDLEMVEFTLHEVLVASLSQVMTKSEAKGIQVVNDVAEQITTETFCGDSLRLQQVLADFLLISINFTPTGGQVVVAASLTKNRLGKLVHLAHLELSITHDGFGVPEALLNQMFGRDGHESEEGISLLISRKLLKLMSGDVRYIREAGKASFILTVELAVAHKLRA* 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03856 1171 FunFam Phytochrome 660 791 - -
Rops8g03856 1171 FunFam Phytochrome 453 584 - -
Rops8g03856 1171 PIRSF Phytochrome_conventional 40 1171 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Rops8g03856 1171 Gene3D - 453 626 IPR043150 -
Rops8g03856 1171 Pfam GAF domain 265 448 IPR003018 GO:0005515
Rops8g03856 1171 Pfam PAS fold 114 230 IPR013654 GO:0006355
Rops8g03856 1171 SMART HKATPase_4 1053 1165 IPR003594 -
Rops8g03856 1171 SMART HisKA_10 941 1006 IPR003661 GO:0000155|GO:0007165
Rops8g03856 1171 CDD PAS 675 781 IPR000014 -
Rops8g03856 1171 PANTHER TWO-COMPONENT HISTIDINE KINASE 856 1148 - -
Rops8g03856 1171 Gene3D PAS domain 656 793 - -
Rops8g03856 1171 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1003 1159 IPR036890 -
Rops8g03856 1171 CDD PAS 808 919 IPR000014 -
Rops8g03856 1171 NCBIfam PAS domain S-box protein 671 786 IPR000014 -
Rops8g03856 1171 ProSiteProfiles PAS repeat profile. 664 734 IPR000014 -
Rops8g03856 1171 SUPERFAMILY PYP-like sensor domain (PAS domain) 668 777 IPR035965 -
Rops8g03856 1171 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1053 1162 IPR003594 -
Rops8g03856 1171 SUPERFAMILY PYP-like sensor domain (PAS domain) 119 232 IPR035965 -
Rops8g03856 1171 ProSiteProfiles Histidine kinase domain profile. 948 1167 IPR005467 -
Rops8g03856 1171 Pfam Phytochrome region 461 636 IPR013515 GO:0006355|GO:0009584
Rops8g03856 1171 Gene3D PAS domain 118 368 - -
Rops8g03856 1171 ProSiteProfiles PAS repeat profile. 797 849 IPR000014 -
Rops8g03856 1171 Pfam PAS fold 667 781 IPR013767 GO:0006355
Rops8g03856 1171 Pfam PAS fold 797 919 IPR013767 GO:0006355
Rops8g03856 1171 SMART gaf_1 265 458 IPR003018 GO:0005515
Rops8g03856 1171 SMART pas_2 796 865 IPR000014 -
Rops8g03856 1171 SMART pas_2 666 732 IPR000014 -
Rops8g03856 1171 Gene3D - 246 609 IPR029016 -
Rops8g03856 1171 SUPERFAMILY GAF domain-like 456 633 - -
Rops8g03856 1171 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 265 438 IPR016132 -
Rops8g03856 1171 Gene3D PAS domain 810 922 - -
Rops8g03856 1171 PRINTS Phytochrome signature 365 386 IPR001294 GO:0006355|GO:0009584
Rops8g03856 1171 PRINTS Phytochrome signature 779 799 IPR001294 GO:0006355|GO:0009584
Rops8g03856 1171 PRINTS Phytochrome signature 563 582 IPR001294 GO:0006355|GO:0009584
Rops8g03856 1171 PRINTS Phytochrome signature 478 498 IPR001294 GO:0006355|GO:0009584
Rops8g03856 1171 PRINTS Phytochrome signature 686 701 IPR001294 GO:0006355|GO:0009584
Rops8g03856 1171 PRINTS Phytochrome signature 280 299 IPR001294 GO:0006355|GO:0009584
Rops8g03856 1171 PRINTS Phytochrome signature 667 683 IPR001294 GO:0006355|GO:0009584
Rops8g03856 1171 PRINTS Phytochrome signature 759 776 IPR001294 GO:0006355|GO:0009584
Rops8g03856 1171 PRINTS Phytochrome signature 178 200 IPR001294 GO:0006355|GO:0009584
Rops8g03856 1171 PRINTS Phytochrome signature 596 614 IPR001294 GO:0006355|GO:0009584
Rops8g03856 1171 Gene3D - 1004 1169 IPR036890 -
Rops8g03856 1171 SUPERFAMILY PYP-like sensor domain (PAS domain) 811 917 IPR035965 -
Rops8g03856 1171 SUPERFAMILY GAF domain-like 245 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03856 Rops-Chr8 79387854 79395697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03856 42 1168 Histidine Kinase Gene Family AT1G09570 75.355 0.0 1764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03856 K12120 - gmx:100791098 1875.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03856 8 79387854 79395697 Rops8g03856 8 79387854 79395697 ECH