Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03854 ATGGCGTGGCGGGAGCTTGGAAAGAAGAGAATATATATGAATTTTAAAAGAGCTTTGACTACAGCGCCGTTTAGGCATGTGGCAGGGTCAAGTTTTGCATCTATCTTTGCTGCACAATCTGTTTATGCATCAGCAAGATGTGTGCCAGATTTCATCAACCACTCATCCATGGGAGTGGCTGGTTTGAGCAGGGGGACTGAAGAATGTGGAATACGGTGCTTCCATGCTAGCACCCAAGTCTGGGCAAGAAGAAGTGATGAGCCATTCGGTTTGAAGACCCCAAGGAAGGAGAAGTATGTGAGAAGAGACAATAGAAACCAGCCACCTGTTGAAGCTCCATATGTCCCTCGTAATGTCACAGCTACCAAATCTAATCCCAGTAAAACAATAGAAATATTTGAAGGCATGACCCTGGTGGAACTGGCAAAGCGTACTGGAAAATCAGTATCTTCTTTGCAGGATATCCTCACAAATGTTGGTGAAAAGGTTGAATCAGAGTTTGAGCCTCTCAGCATGGATATTGCAGAGCTTGCTGCAATGGAGGTTGGCATCAATGTTAAGAGGCTACATTCAGCTGAAGGTGCAGAGATTTTACCACGTTCTGCAGTTGTAACTGTGATGGGTCATGTTGATCATGGTAAAACTTCTCTTCTCGATGCCTTGCGTCAAACATCAGTGGTGGCCAAGGAGGCTGGTGGCATAACTCAGCACCTTGGTGCCTTTGTGGTGGCAATGCCATCAGGAGCATCGATCACATTTCTTGACACTCCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGTGCAGCAGTGACAGACATAGTAGTGCTAGTTGTTGCTGCAGATGATGGTGTGATGCCTCAAACACTTGAAGCCATGTCCCATGCAAAAGCAGCTAATGTACCAATTGTAGTTGCAATTAATAAATGTGACAAACCAGGTGCAAATCCTGAAAGAGTAAAAATGCAGCTTGCTTCAGAGGGCTTGCTGTTGGAGGAAATGGGTGGGGATGTTCAGGTCATTGAAGTTTCAGCAACTGAAAAATTTGGACTAGATAACCTAGAGGAAGCTTTACTCCTTCAGGCTGATTTGATGGATCTTAAAGCACGGGTTGATGGGCCTGCTCAAGCGTATGTGGTGGAAGCAAGACTTGACAAAGGACGGGGTCCATTAATAACTACTATAGTGAAGGCAGGGACTCTAGTTTGTGGTCAGCATGTGGTTGTAGGCACACAGTGGGGAAGAATAAGGGCCATCAAAGACATGGTAGGGAGATTAACTCAGCGAGCAACACCTGCAATGCCTGTTGAGATTGAAGGGCTTCGAGGGCTGCCGATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGGGCTAGAATGCTTAGTTCTGGTAGGAAAAGGAAATCTGAGGAGGACAGGCTTAGGAGCAAGATGATACAGGACAAGCCAACTACTTCAGATGATTCCGAGGAGGTTCCACAGAGGGTTGAAATGCCAGTAATAGTCAAAGCAGATGTTCAGGGAACTGTTCAAGCTGTCACAGATGCATTGAGAACTTTAAATAGCTCTCAGGTTTTTGTGAATGTTGTCCATGTTGGCGTTGGGCCAATTTGTCATTCTGATGTGGACTTAGCTCAGGCTTGTGGTGCTTGCATAGTTGGATTCAATGTCAAGAGTCCACCTACTTCTCTTAGTCAGGCAGCAACTCGTGCTAGTATCAAGGTAATTCTGCACCGTGTAATTTACCACCTGTTGGAGGACATAGGCAATTTCATAATAGAGAAGGCCCCTGGAACTTTTGAGACCCAGGTAGCTGGGCAAGCAGAAGTGCTGAATATCTTTGAAGTCAAAGGGAGCAAGTCCAAGGGACCTGATGTGAAGATAGCTGGTTGTAGGGTTATTGATGGTTTTGTGACCAGGTCAGCAACCATGAGGCTTCTGAGGAGTGGTGAAGTAGTGTTTGAAGGACTTTGTACATCTCTTAAGAGGGAGAAACAGGATGTGGATTCTGTGAAGAAGGGAAATGAGTGTGGACTTGTAATCAGTAACTGGTATGATTTCCAAATTGGAGACGTCATCCAGTGCTTGGAACAAGTTGTGAGAAAACCCAAGTTCATTAAGTCAGAGAGTGGTGCTGTTCGAATTGAGTGCTGA 2163 0.4563 MAWRELGKKRIYMNFKRALTTAPFRHVAGSSFASIFAAQSVYASARCVPDFINHSSMGVAGLSRGTEECGIRCFHASTQVWARRSDEPFGLKTPRKEKYVRRDNRNQPPVEAPYVPRNVTATKSNPSKTIEIFEGMTLVELAKRTGKSVSSLQDILTNVGEKVESEFEPLSMDIAELAAMEVGINVKRLHSAEGAEILPRSAVVTVMGHVDHGKTSLLDALRQTSVVAKEAGGITQHLGAFVVAMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPERVKMQLASEGLLLEEMGGDVQVIEVSATEKFGLDNLEEALLLQADLMDLKARVDGPAQAYVVEARLDKGRGPLITTIVKAGTLVCGQHVVVGTQWGRIRAIKDMVGRLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRKRKSEEDRLRSKMIQDKPTTSDDSEEVPQRVEMPVIVKADVQGTVQAVTDALRTLNSSQVFVNVVHVGVGPICHSDVDLAQACGACIVGFNVKSPPTSLSQAATRASIKVILHRVIYHLLEDIGNFIIEKAPGTFETQVAGQAEVLNIFEVKGSKSKGPDVKIAGCRVIDGFVTRSATMRLLRSGEVVFEGLCTSLKREKQDVDSVKKGNECGLVISNWYDFQIGDVIQCLEQVVRKPKFIKSESGAVRIEC* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03854 720 Hamap Translation initiation factor IF-2 [infB]. 8 706 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Rops8g03854 720 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 117 714 IPR015760 -
Rops8g03854 720 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 493 609 IPR036925 -
Rops8g03854 720 CDD IF2_eIF5B 203 366 - -
Rops8g03854 720 Gene3D Translation factors 603 705 - -
Rops8g03854 720 FunFam Translation initiation factor IF-2 496 603 - -
Rops8g03854 720 Pfam Translation-initiation factor 2 493 591 IPR023115 -
Rops8g03854 720 Pfam Elongation factor Tu GTP binding domain 204 360 IPR000795 GO:0003924|GO:0005525
Rops8g03854 720 SUPERFAMILY Translation proteins 373 455 IPR009000 -
Rops8g03854 720 Gene3D Translation factors 372 488 - -
Rops8g03854 720 SUPERFAMILY Translation proteins 604 705 IPR009000 -
Rops8g03854 720 Gene3D - 496 601 IPR036925 -
Rops8g03854 720 FunFam Translation initiation factor IF-2 196 371 - -
Rops8g03854 720 MobiDBLite consensus disorder prediction 463 495 - -
Rops8g03854 720 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 199 369 IPR000795 GO:0003924|GO:0005525
Rops8g03854 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 390 IPR027417 -
Rops8g03854 720 FunFam Translation initiation factor IF-2 604 707 - -
Rops8g03854 720 Gene3D - 197 371 IPR027417 -
Rops8g03854 720 CDD mtIF2_IVc 609 698 - -
Rops8g03854 720 NCBIfam small GTP-binding protein domain 202 353 IPR005225 GO:0005525
Rops8g03854 720 NCBIfam translation initiation factor IF-2 128 703 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Rops8g03854 720 CDD IF2_mtIF2_II 375 470 IPR044145 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03854 Rops-Chr8 79369228 79379906 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03854 200 594 Eukaryotic Initiation Factors Gene Family AT1G21160 27.549 1.13e-27 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03854 K02519 - gmx:100781314 1229.93