Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03852 ATGGCTTCTATCTCAGTCGTAGGTGTTTCCTCCGTTTATAAAGCTCCATCTCTGGAACTATATAAGAGGCCAACAACCACTTCAACTGCTTCCGTTAGGCTTCAAAGTTGTTCTAACAACCTCGTCAGAGCTAACCGTCTAACTAACTTCAAGAGTTCAGATAGGTTCGTTCCTTCCGCCATTGCTACTCCCAATTCTTCACTCTTAAGCGAAGAAGCTTTCAAAGGTATCGGCCATGGCTTCTCCGATGACTTCGCTTCCGAAACCGATGAATCTTCTTCTCCTGCTAACGACGAAGAACAACTCGACATTTCCAAGCTCGGTTTGCCATCGCGCCTCGTCGATTCACTTCAAAACCGTGGGATTAATCATCTTTTTCCCATTCAGAGAGCTGTGTTAATACCTGCACTAGAAGGTAGAGATATCATTGCTCGTGCAAAGACCGGGACAGGGAAGACATTGGCATTTGGGATTCCAATTCTCAAAGGTCTCACTGAAGATGAGCAAGCAGGTTCTCACAGGAGGTCTGGTCGTCTTCCTAGGTTTTTGGTCCTTGCACCTACCAGGGAGTTAGCAAAGCAAGTAGAGAAAGAGATAAAAGAATCTGCGCCTTATCTAAGCACAGTTTGTGTCTATGGGGGTGTTTCTTATGTTACTCAGCAAAGTGCACTTTCACGTGGTGTTGATGTAGTGGTTGGAACACCTGGTAGAATAATAGATTTAATAAACGGGAACAGCCTTAAGCTGAATGAAGTTCAGTATTTGGTCCTCGATGAAGCTGATCAAATGCTTGCTGTTGGGTTTGAGGAGGACGTGGAAGTAATTTTGGAAAAGCTCCCATCTGAGAGGCAGAGCATGCTTTTTTCAGCAACTATGCCTGGTTGGGTGAAGAAATTGGCAAGGAAATATCTGGACAATCCATTGACAATTGACTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTATGTCAGCCACTGCCACTTCAAAGCGGACAATTCTTTCTGATCTTATAACTGTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACACAGACTAAAAGAGATGCTGATGAGGTATCATTGGCATTAACAAATACTATAACTTCGGAAGCACTGCATGGTGATATCTCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTCAGGCAAGGAAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGGCTTGATATTCCCAATGTTGATTTGATTATCCATTACGAGCTTCCCAATGATCCTGAGACTTTTGTACATCGCTCTGGCCGTACTGGCCGTGCAGGAAAACAAGGTACTGCCATTCTTTTGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGCGATGTAGGCAGCAAATTTGAATTTGTCAGCCCACCAGCTATGGAAGAGGTTTTGGAGTCATCTGCTGAGCAAGTTGTTGCCGCACTTAATGGAGTTCATCCTGAATCTGTTGCATTTTTCACCCCAACTGCACAAAAACTGATTGAAGAACAAGGAACAGGTGCCCTTGCAGCTGCACTAGCACATCTGAGTGGATTCTCCAAACCTCCATCATCCCGGTCTCTTATCACCCACGAACAGGGATGGGTTACGTTGCAACTAACTCGAGATCCAAATATTTCTAGAAGATATTTTTCAGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTTATTCTGCAGCTGCTGATGAAGTTGGAAAAATAAATTTAATTGCAGATGAAAAGGTTCAAGGAGCCGTTTTTGATCTTCCAGAGGACGTTGCTAAAGAGTTACTTAATATGGACATACCACCTGGACACACTATTTCCAAGATTACCAAGTTACCTCCCTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAGGTTTTCTGATAGAGATCGAAGTAACCGTAGAGGTTCTAGGGATCAGAGAGGTTTTAAACCCTCACGAGGGGGATGGAATGGGGGCCGAGACTCTGATGATGATTTTGGTGATTCATATAGGAGAGGTAGTAGAAATTATAAAACTGGCAACAGCTGGTCTCGAGCAGCAAAAAGCAGTGGGGATGATTGGCTAATTGGAGGCAGACGATCAAGCAGGTCTTCTTCGTCAGACAGAGGCTTTGGAGGAGCCTGTTTTAATTGTGGGGAATCTGGGCACCGAGCATCTGATTGTCCAAACAAGCGAGGCTTTTTTTAG 2241 0.4418 MASISVVGVSSVYKAPSLELYKRPTTTSTASVRLQSCSNNLVRANRLTNFKSSDRFVPSAIATPNSSLLSEEAFKGIGHGFSDDFASETDESSSPANDEEQLDISKLGLPSRLVDSLQNRGINHLFPIQRAVLIPALEGRDIIARAKTGTGKTLAFGIPILKGLTEDEQAGSHRRSGRLPRFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLNEVQYLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPGWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLYAMSATATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNTITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILLYTSSQRRTVRSLERDVGSKFEFVSPPAMEEVLESSAEQVVAALNGVHPESVAFFTPTAQKLIEEQGTGALAAALAHLSGFSKPPSSRSLITHEQGWVTLQLTRDPNISRRYFSARSVTGFLSDVYSAAADEVGKINLIADEKVQGAVFDLPEDVAKELLNMDIPPGHTISKITKLPPLQDDGPPSDFYGRFSDRDRSNRRGSRDQRGFKPSRGGWNGGRDSDDDFGDSYRRGSRNYKTGNSWSRAAKSSGDDWLIGGRRSSRSSSSDRGFGGACFNCGESGHRASDCPNKRGFF* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03852 746 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 133 310 IPR014001 -
Rops8g03852 746 Gene3D - 327 516 IPR027417 -
Rops8g03852 746 MobiDBLite consensus disorder prediction 685 699 - -
Rops8g03852 746 Gene3D - 103 314 IPR027417 -
Rops8g03852 746 Pfam GUCT (NUC152) domain 531 631 IPR012562 GO:0003723|GO:0004386|GO:0005524
Rops8g03852 746 MobiDBLite consensus disorder prediction 668 683 - -
Rops8g03852 746 Pfam Zinc knuckle 725 741 IPR001878 GO:0003676|GO:0008270
Rops8g03852 746 CDD DEADc 113 311 - -
Rops8g03852 746 Gene3D - 709 744 - -
Rops8g03852 746 Pfam Helicase conserved C-terminal domain 336 444 IPR001650 -
Rops8g03852 746 FunFam ATP-dependent RNA helicase RhlE 92 313 - -
Rops8g03852 746 CDD GUCT_Hera 538 618 - -
Rops8g03852 746 SMART c2hcfinal6 725 741 IPR001878 GO:0003676|GO:0008270
Rops8g03852 746 Pfam DEAD/DEAH box helicase 126 299 IPR011545 GO:0003676|GO:0005524
Rops8g03852 746 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 339 484 IPR001650 -
Rops8g03852 746 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 88 663 - -
Rops8g03852 746 CDD SF2_C_DEAD 336 453 - -
Rops8g03852 746 MobiDBLite consensus disorder prediction 621 722 - -
Rops8g03852 746 ProSiteProfiles Zinc finger CCHC-type profile. 726 741 IPR001878 GO:0003676|GO:0008270
Rops8g03852 746 SMART helicmild6 364 444 IPR001650 -
Rops8g03852 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 465 IPR027417 -
Rops8g03852 746 SMART ultradead3 121 327 IPR014001 -
Rops8g03852 746 SUPERFAMILY Retrovirus zinc finger-like domains 712 744 IPR036875 GO:0003676|GO:0008270
Rops8g03852 746 MobiDBLite consensus disorder prediction 639 659 - -
Rops8g03852 746 FunFam Nucleolar RNA helicase II 332 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03852 Rops-Chr8 79319589 79325789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03852 88 466 Eukaryotic Initiation Factors Gene Family AT1G72730 36.883 3.17e-64 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03852 - - gmx:100789516 1161.75