Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03843 ATGGAAAAGTTTATTTTCAGTGGTCTTCTATTGTTTTTGAGGTTACTCACTACAGAACTTAGAGTAGCATCTGCTGCGTGGCTGCAAGCTCATGCAACCTTCTATGGAGGAAGCGATGCCTCTGGAACAATGGGTGGAATTGGAGAGATTTCCAGAGTTTGGATCAAAGGGTCAAAAATGAAGAACTGGGAATCAATGTCAAGGAATTGGGGTGCTAACTGGCAAAGCTTAAGCTATCTCAATGGTCAGAGCTTGTCCTTCAGAGTTCAACTCACAAATGGAAAGACCCGCACTGCTATTAACGTGGCACCCTCCAATTGGAGATTTGGTCAGTCTTTCAAGAGTAATGTTCAGTTCTGA 360 0.4333 MEKFIFSGLLLFLRLLTTELRVASAAWLQAHATFYGGSDASGTMGGIGEISRVWIKGSKMKNWESMSRNWGANWQSLSYLNGQSLSFRVQLTNGKTRTAINVAPSNWRFGQSFKSNVQF* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03843 119 PRINTS Expansin signature 101 117 IPR002963 GO:0009664
Rops8g03843 119 PRINTS Expansin signature 36 57 IPR002963 GO:0009664
Rops8g03843 119 PRINTS Expansin signature 72 93 IPR002963 GO:0009664
Rops8g03843 119 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 45 115 IPR007117 -
Rops8g03843 119 Pfam Expansin C-terminal domain 44 104 IPR007117 -
Rops8g03843 119 SUPERFAMILY PHL pollen allergen 44 115 IPR036749 -
Rops8g03843 119 Gene3D - 42 119 IPR036749 -
Rops8g03843 119 PANTHER EXPANSIN-A15 45 116 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03843 Rops-Chr8 79231064 79232350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03843 44 119 Expansin Gene Family AT4G01630 72.368 2.18e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03843 - - psat:127132523 144.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03843 8 79231064 79232350 Rops8g03843 8 79231064 79232350 ECH