Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03840 ATGGCGTCTTCATTTTCCACTCAGTTGGTTCAATGTCAGAACCCACTTCCAGGTCGTTGTCATCTTCAGGGTAATTTTAGTCGAGATGCGTCTAAGGTTATGATGTGTAGCGGTACTAGATCACAGCTTGGTCAAGGTAAAGCATTGGCATCAAGATCACATTATGCCTTGAGGTTTTCCGCCACGCAACAATCTGAAGCAAGATCAATTAGATATAGGAGAATGACATGTGTCAATGCTACAAACAATGTTCAAGAGCTGCAAGCCAAAGTTACTACCAAATGTTTCTTTGATGTGGAAGCTGGGGGTGAACCTATGGGCAGGATTGTTTTGGGCCTATTTGGGGAGGTTGTTCCTAAAACAGTTGAAAATTTCCGTGCTTTGTGCACAGGAGAGAAAGGATATGGTTACAAAGGGAGCTCCTTCCATCGTATAATCAAAGAATTCATGATTCAGGGAGGGGACTTCACTGAGGGAGATGGAACTGGTGGAATTAGTATCTATGGTCCTAGTTTTAAAGACGAGAGTTTTGCCTTGAAGCATATTGGTCCTGGAGTTTTGAGCATGGCAAATGCTGGTCCTAATACCAATGGTAGTCAATTTTTTATTTGCACTGTAAAGACTCCATGGTTAGACAATCGCCATGTTGTGTTTGGACATGTCATTGATGGAATGGATGTTGTGAGGACACTTGAGTCCCAGGAGACAAGCAGGTTGGATATCCCTCAGAAGCCTTGCAGAATTGTTGATTGCGGAGAATTGCCTATAGATGGTTGA 777 0.4299 MASSFSTQLVQCQNPLPGRCHLQGNFSRDASKVMMCSGTRSQLGQGKALASRSHYALRFSATQQSEARSIRYRRMTCVNATNNVQELQAKVTTKCFFDVEAGGEPMGRIVLGLFGEVVPKTVENFRALCTGEKGYGYKGSSFHRIIKEFMIQGGDFTEGDGTGGISIYGPSFKDESFALKHIGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRTLESQETSRLDIPQKPCRIVDCGELPIDG* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03840 258 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 137 154 IPR020892 GO:0003755|GO:0006457
Rops8g03840 258 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 96 253 IPR002130 GO:0000413|GO:0003755
Rops8g03840 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 200 212 IPR002130 GO:0000413|GO:0003755
Rops8g03840 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413|GO:0003755
Rops8g03840 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 213 228 IPR002130 GO:0000413|GO:0003755
Rops8g03840 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 142 154 IPR002130 GO:0000413|GO:0003755
Rops8g03840 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 185 200 IPR002130 GO:0000413|GO:0003755
Rops8g03840 258 Gene3D - 82 257 IPR029000 -
Rops8g03840 258 CDD cyclophilin_ABH_like 94 252 - -
Rops8g03840 258 SUPERFAMILY Cyclophilin-like 90 254 IPR029000 -
Rops8g03840 258 FunFam Peptidyl-prolyl cis-trans isomerase 81 258 - -
Rops8g03840 258 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 94 254 - -
Rops8g03840 258 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 97 252 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03840 Rops-Chr8 79194652 79196997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03840 107 251 U-box Gene Family AT5G67530 44.521 1.88e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03840 K03768 - gmx:100785805 444.506