Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03836 ATGGGAAGGCACTCCTGTTGTTACAAGCAAAAGCTTAGGAAGGGTCTATGGTCACCTGAGGAAGATGAAAAACTTCTGAGACATATCACAAAATATGGTCATGGATGTTGGAGTTCAGTTCCTAAGCAAGCAGGTTTGCAGAGGTGTGGTAAGAGTTGCAGGCTTAGGTGGATCAATTACTTAAGGCCTGATTTAAAGAGAGGTACTTTTTCACAAGAAGAAGAAAATCTTATCATTGAACTTCATGCAGTATTAGGCAATAGATGGTCTCAAATTGCAGCACAATTGCCAGGGAGGACTGATAATGAAATAAAGAATTTGTGGAATTCTTGCTTGAAGAAGAAATTGAGGCAAAGAGGTATAGACCCTGTGACCCATAAACCACTTTGTGAGGTTGAGAATGCAGAGGAGGACAAAACAAGGAGCCAAGAGAAAGTGTCCAATGAATTGAACCTCCTGAAATCAGATGCAGCTTCTCATGAGCAAAGACCATCTTATGAAACAGAGATGGAAGGTTCTTCCAGCTCCAAGATTAACAGCAAAAACGACACCAACTTAATAACCAATTGTTCTAGTAAAGACTTGTTCCTAGACAGGTTCATGACCTCCCACCAAGAGAGCTACACCACTAGTTGCCAACCCTTAGATTTGATGGGAAATTACCCTCTTCAAATGAGTTATGCATCTACTGATACTCTCCCAACCAATTCAAATTCTTGTCATTGGTTCAACCAAACTGGAAGGCCCTTTGATATGAACTCAGAATTTACTTCTAATGTTATGTCTATTCTTCCACCAACTAGCTCATTTCTCCCTAATTCTTTTTGCTACAAGCCATCTCTTGCTGTCCCCTCAGAAGATATTTCTTCAGCCTCTTTTGCTGTGAATGGATCCAATTACTGGGAAGCCAGTGCCTCCAACAACAGCAATAGCAGCAACACAAGTGATGGCAGCAGAGAATTGACAAGTAGCTGCCCCTTAAACATGAAGAACAATAGCATCCTTTCTTCTTGGGGATTGACAGATTGTAGTGCCTCTACTAAAGAGGCTCAAATTCAATTGATGGAAAGCCAGACAGAAGAAGCCAAGTGGTCGGAGTACCTTCACAACCCAATGTTAATGTTGGCAGCTGTACAAAATCAAGGACCTGAATCTTTATGCAACCAGATAAAGCCTGCCACCACACATTTGGTACCTGATACTTTAGGGGCCATGTTGCCTCATTCCAAGCAGCAAGAAACTTCCCAAACTTCTAGTATCTTTTCCAAGGACATTCAGAAGCTAACAGCAGCCTTTGGACATATATAG 1308 0.4159 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLCEVENAEEDKTRSQEKVSNELNLLKSDAASHEQRPSYETEMEGSSSSKINSKNDTNLITNCSSKDLFLDRFMTSHQESYTTSCQPLDLMGNYPLQMSYASTDTLPTNSNSCHWFNQTGRPFDMNSEFTSNVMSILPPTSSFLPNSFCYKPSLAVPSEDISSASFAVNGSNYWEASASNNSNSSNTSDGSRELTSSCPLNMKNNSILSSWGLTDCSASTKEAQIQLMESQTEEAKWSEYLHNPMLMLAAVQNQGPESLCNQIKPATTHLVPDTLGAMLPHSKQQETSQTSSIFSKDIQKLTAAFGHI* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03836 435 Gene3D - 11 67 - -
Rops8g03836 435 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops8g03836 435 MobiDBLite consensus disorder prediction 168 183 - -
Rops8g03836 435 Gene3D - 69 152 - -
Rops8g03836 435 MobiDBLite consensus disorder prediction 304 323 - -
Rops8g03836 435 SMART sant 13 63 IPR001005 -
Rops8g03836 435 SMART sant 66 114 IPR001005 -
Rops8g03836 435 PANTHER MYB DOMAIN PROTEIN 55 1 342 - -
Rops8g03836 435 MobiDBLite consensus disorder prediction 134 183 - -
Rops8g03836 435 FunFam Myb transcription factor 11 67 - -
Rops8g03836 435 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops8g03836 435 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Rops8g03836 435 CDD SANT 17 61 IPR001005 -
Rops8g03836 435 FunFam MYB transcription factor 68 140 - -
Rops8g03836 435 Coils Coil 132 163 - -
Rops8g03836 435 CDD SANT 69 109 IPR001005 -
Rops8g03836 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops8g03836 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops8g03836 435 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Rops8g03836 435 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03836 Rops-Chr8 79152671 79154609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03836 1 157 MYB Transcription Factor Family AT4G01680 85.350 3.05e-96 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g03836 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03836 K09422 - gmx:100037467 624.009