Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03834 ATGACTCAGAAGATGCTTGACTCAGGGATGACAAGAAGTTCCTCCCATCTTGCTTCCATTTATGGCAAGGATTTCCTTGAGCTGGTATGGGAAAATGGTCAAATTCTTGTACAAGGAGGTTCATCAAATAGAACACGAAACACTCCTTTGTGTATCGGGCATTCACTAAACCCTTCACGTAAAGAGGAAGATGCCTGCATTACAAAAAGAACAAGGTTAAGCACATCATCATACTCACTTTTGGATCACTTGCCAACTCAAAAATACTCTGACCTGAGTCATATTGATCTGCAATCCTCCCAAAGCAAGCAATCCTTCAAGCCTAATGAAGAATTCACAAACTTAAGACCAATAAAAGACTATAAGCTCACTGGGGGAGCTCATCAACCCGTTACTACAGCTAATAGTCACTTGTGTACATATTCCTCACAACAGTGCTTACCCTCAGCTTTGCTTAAGAAACCAATAACGGATTCAAACCAAACACCGACAACAAACTCACAGAAACAGTACTTGGGATGTGATCAAAGATCAGGAAAGGTGAACTTCTCCAACTTTTTGATACCTGCAGTGTTTCTCAAATCTACTCATCAGGGAAACAGTGCAACCAAGAAGACAAGAAATGCATCTTCGGCAAGAGCGGAGGAGATCGAATCGAAAGCAGCAGCAGTTGCTTCTACTAGTAGCAAAACTCCTCCTGATCATCCCGCAGTGATTAAATCAGCCAAAGGATCACATGGTGGTCCCACAGGATTTAAAGAACAAACATCTTTAACTGCTAATAAGTTGAACCCCGCATCCCTTGCTGAAAGAAGTGCGGAACCACCCCTTGATGAGCACTCTGAAGCTATTGGCAATAATAATGCCCTTGGAACTCACAGATCCCATGGTCAAAATCATAACCAAACCTCAACCTCAACAGCACTTAGCGCAAAGGGAAAAGCTAATACTACTAGTTTGTGTAATGAACGAGCATCTTCTTCTGTATGCTCGCTTGGAGCCTCAAACGACCCAAACTTTGGTTTCGGGAAACATGAGGACACTGAAGACTCAACATATTTAAGTGATAATGATGAAGAACCAGAAGATATAGTAAAGGAAATGACAGCTCGGGAGGATAACAGAGTCAAGAGAAGCAGGAACCCAGAGATTCATAATTTATCTGAAAGGAAACGAAGAGATAGAATCAACAAGAAGATGCGCACATTGAAAGAGCTCATACCCAATTGCAATAAGATGGACAAAGCTTCAATGCTTGATGATGCCATTAACTATCTAAAGACCCTCAAGCTTCAGTTGCAGATTATGTCAATGGGTAATGGGCTTTGTATGCCATTTATGATGTTACCTGCTGCAGCACATTTACCTCAGTTAATGGGAGCTGGAATGGGTTTCGGGCCAGGAACAGGAATCCCTTGCAGCCCACCACAGTTCCCTATTAATATTCCACCATTATCTGGTGTCACAGACAATAGACCTCAGATGTTTGGTTTCTCCAACCAAATACCGCCAATGCCAATGCCTAATGCACCTGTTGGTCCTATCATTGGAAACTCTTCTACACAACCACTTATGGCAACCAGCACTGCTACCCGCCTGGCTAATTCTGCAACAAATCTAGAGTTCTCAGTCCCTAACAACTCAGATCTTTATGCAAAGGCTGAAAATGCAACAAAGCAAGCGCGGAATCCTTCACCATAG 1701 0.4262 MTQKMLDSGMTRSSSHLASIYGKDFLELVWENGQILVQGGSSNRTRNTPLCIGHSLNPSRKEEDACITKRTRLSTSSYSLLDHLPTQKYSDLSHIDLQSSQSKQSFKPNEEFTNLRPIKDYKLTGGAHQPVTTANSHLCTYSSQQCLPSALLKKPITDSNQTPTTNSQKQYLGCDQRSGKVNFSNFLIPAVFLKSTHQGNSATKKTRNASSARAEEIESKAAAVASTSSKTPPDHPAVIKSAKGSHGGPTGFKEQTSLTANKLNPASLAERSAEPPLDEHSEAIGNNNALGTHRSHGQNHNQTSTSTALSAKGKANTTSLCNERASSSVCSLGASNDPNFGFGKHEDTEDSTYLSDNDEEPEDIVKEMTAREDNRVKRSRNPEIHNLSERKRRDRINKKMRTLKELIPNCNKMDKASMLDDAINYLKTLKLQLQIMSMGNGLCMPFMMLPAAAHLPQLMGAGMGFGPGTGIPCSPPQFPINIPPLSGVTDNRPQMFGFSNQIPPMPMPNAPVGPIIGNSSTQPLMATSTATRLANSATNLEFSVPNNSDLYAKAENATKQARNPSP* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03834 566 MobiDBLite consensus disorder prediction 198 255 - -
Rops8g03834 566 Gene3D - 375 437 IPR036638 GO:0046983
Rops8g03834 566 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 380 429 IPR011598 GO:0046983
Rops8g03834 566 Pfam Helix-loop-helix DNA-binding domain 385 429 IPR011598 GO:0046983
Rops8g03834 566 PANTHER TRANSCRIPTION FACTOR PIF3 7 559 IPR044273 GO:0003700|GO:0006355
Rops8g03834 566 MobiDBLite consensus disorder prediction 340 359 - -
Rops8g03834 566 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 378 442 IPR036638 GO:0046983
Rops8g03834 566 CDD bHLH_AtPIF_like 380 442 IPR047265 -
Rops8g03834 566 MobiDBLite consensus disorder prediction 285 311 - -
Rops8g03834 566 SMART finulus 386 435 IPR011598 GO:0046983
Rops8g03834 566 MobiDBLite consensus disorder prediction 268 311 - -
Rops8g03834 566 FunFam Basic helix-loop-helix transcription factor 375 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03834 Rops-Chr8 79083376 79086005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03834 302 541 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 41.455 1.05e-40 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops8g03834 HLH 5.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03834 K12126 - gmx:100804665 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03834 8 79083376 79086005 Rops6g02016 6 38054844 38057321 PCT