Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03833 ATGGGCAAAGCCACTAGTTCCCCCTCTTCGTCTATTAGCAGCAACAGCAACCACCACCTTGTGATTTCAACTGCATCCTCTCTCACACAGCTCAACCAAGAAGATCTTCCTACAGATCTTAGGCTTGGACTCAGCATTTCCCCAACTCAACATGTTGGCTCTTCTATTTCAAGGGGACAATGGCAACCAAACCACCCACTATTAAGCAGTTCACAAGCTGCTGAAAGAAATGATTGCAGTGATCTAAGCAGCTTCTTTGTGAAGGTGTACATGGAAGGCATTCCAATCGGTAGAAAACTCAATATACTAGCTCATGATGGTTACAATGAGTTAGTAAATACTCTTGAACACATGTTCGACACTACCATTCTCTGGGGGACAGAGATGGATGGAGTGCACCCAGAGAGATGCCATGTGCTAACTTATGAAGACGAAGAAGGGGATTTGGTCATGGTTGGGGATGTCCCTTGGGAGATGTTCTTATCCACTGTAAAGAGGTTGAAGATCACCAGGGTAGACACATTCGGGTGTTGA 534 0.4532 MGKATSSPSSSISSNSNHHLVISTASSLTQLNQEDLPTDLRLGLSISPTQHVGSSISRGQWQPNHPLLSSSQAAERNDCSDLSSFFVKVYMEGIPIGRKLNILAHDGYNELVNTLEHMFDTTILWGTEMDGVHPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03833 177 Pfam AUX/IAA family 73 171 IPR033389 -
Rops8g03833 177 MobiDBLite consensus disorder prediction 53 73 - -
Rops8g03833 177 SUPERFAMILY CAD & PB1 domains 83 169 - -
Rops8g03833 177 Gene3D - 78 176 - -
Rops8g03833 177 ProSiteProfiles PB1 domain profile. 84 174 IPR000270 GO:0005515
Rops8g03833 177 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 172 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03833 Rops-Chr8 79056855 79057685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03833 88 169 B3 DNA Binding Superfamily AT4G23980 38.554 2.74e-13 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops8g03833 AUX_IAA 2.2e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03833 K14484 - gmx:100818376 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03833 8 79056855 79057685 Rops6g02019 6 38083744 38084615 PCT