Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03830 ATGGAGAACCGACAACAACACAACCACCGTGAATTGACCTTCTTAAGCTCCGGCAACTTCATCCCCAACACAGATCCTCCCATCAAAGAAATGGATTTCTTCTCATCAGCTAACAACAATAACAACAACAAAGATACTAATGATGATGATGATCATCATCATCAGGAGCAACAGCATGATCAAGATCAACATGACAATCATGCCAAAGATGGATCATCAACACTCCTCACTGATCACTTTGTAAACACGGGGCTGAATTTAACGTGTGCAAGTGCTGCTGGAGTGTCAAGAGGAGCAAATAGTGAAAATCCTGAAACTGAGCTGAGTGCACTTGAAAGTGAATTGCGGAGACTACAAGAAGAGAATCGCAGGTTGAAAATTGTGTTGGACCAGATCACCAAAAGCTATAGCCAATTACAAACTCAGCTGTTCATCACTTTGCAGAAACAAAAGTCTCATCAGAACATTGAATCAAATGGGATGATGCCGGGACAAAAAGTTATGGACCCAGGGCCATGCACCAAAATAGACGTCAATGATGCATCGGTCTCTAATGATAAGACTGGTCAAGAAGTATCGGTTTCTCCCTCAAACAACGGGGAGGTAATGTCAAAGAAACGCGACCATCATTTGACTAAACTTAATCTTGGAAAGCAAGCTTGTCCTGATTCTGCTGAAGATGTTCTTGACCGTTCATCCTCACAGAGTTGGAGCTCATCAAAGAGCCCCAAACTAGAAGAACCCAAAACTGGTGAACAAGTTGCCAGTGAGATTCCTATCAGAAAAGCCAGGGTTTCTGTCCGTGCAAGATCAGAAGCTCCCCTGATTAGCGATGGATGTCAGTGGAGGAAATATGGGCAAAAAATGGCCAAAGGTAACCCTTGTCCTCGTGCCTACTATCGTTGCACCATGGCTGTAGGATGTCCAGTGCGTAAACAGGTGCAAAGATGTGCAGAGGACAAGACAGTGCTGATAACAACTTATGAAGGTAATCACAATCACCCTCTTCCACCAGCTGCTACAGCCATGGCAAATACCACTTCAGCAGCTTCAGCCATGCTTCTATCAGGTTCAGCCTCATCAACACTGAACAAGGAAAGCTCTGCAGGATATTTATCTTCTTCAATTCCCTATGCTTCATTAGCAACCCTATCAGCTTCTGCACCCTTCCCAACGGTTACCCTCGACTTGACCCACAACCCCAATGCCATGCAACTGCATCGATTACCTCTGCCATTGCTTGCAGCTGATGGTCCAAACCTACATGGGCACCCCTTGTTCTTGCCACAGAAGCTACCACCTGCATCTTTGCCCTTACTTCAACTAGGGCAACGACCACCTTCTTCTATGGTCGAAACAATGACTGCAGCTATTGCTTCGGATCCAAACTTCACTGCAGCATTGGCGGCAGCGATCTCGTCAATCATTGGGGCACCAAGAGGTAGTGATGGTAATAATAATGGAGGTGCTGTTCCTGGTTCACCACAGCTTCCTCAGTCATGTACTACATTCTCCACAAACTAG 1524 0.4554 MENRQQHNHRELTFLSSGNFIPNTDPPIKEMDFFSSANNNNNNKDTNDDDDHHHQEQQHDQDQHDNHAKDGSSTLLTDHFVNTGLNLTCASAAGVSRGANSENPETELSALESELRRLQEENRRLKIVLDQITKSYSQLQTQLFITLQKQKSHQNIESNGMMPGQKVMDPGPCTKIDVNDASVSNDKTGQEVSVSPSNNGEVMSKKRDHHLTKLNLGKQACPDSAEDVLDRSSSQSWSSSKSPKLEEPKTGEQVASEIPIRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTVLITTYEGNHNHPLPPAATAMANTTSAASAMLLSGSASSTLNKESSAGYLSSSIPYASLATLSASAPFPTVTLDLTHNPNAMQLHRLPLPLLAADGPNLHGHPLFLPQKLPPASLPLLQLGQRPPSSMVETMTAAIASDPNFTAALAAAISSIIGAPRGSDGNNNGGAVPGSPQLPQSCTTFSTN* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03830 507 MobiDBLite consensus disorder prediction 1 74 - -
Rops8g03830 507 MobiDBLite consensus disorder prediction 181 204 - -
Rops8g03830 507 MobiDBLite consensus disorder prediction 44 72 - -
Rops8g03830 507 FunFam probable WRKY transcription factor 31 261 338 - -
Rops8g03830 507 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 99 485 IPR044810 GO:0003700
Rops8g03830 507 SMART WRKY_cls 276 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g03830 507 MobiDBLite consensus disorder prediction 221 255 - -
Rops8g03830 507 MobiDBLite consensus disorder prediction 228 244 - -
Rops8g03830 507 Gene3D WRKY domain 261 338 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g03830 507 ProSiteProfiles WRKY domain profile. 271 337 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g03830 507 SUPERFAMILY WRKY DNA-binding domain 269 337 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g03830 507 MobiDBLite consensus disorder prediction 483 507 - -
Rops8g03830 507 MobiDBLite consensus disorder prediction 181 201 - -
Rops8g03830 507 Coils Coil 101 135 - -
Rops8g03830 507 MobiDBLite consensus disorder prediction 487 507 - -
Rops8g03830 507 Pfam WRKY DNA -binding domain 278 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03830 Rops-Chr8 79000712 79003817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03830 1 507 WRKY Transcription Factor Family AT4G01720 41.030 3.34e-87 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops8g03830 WRKY 5.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03830 - - gmx:100783661 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03830 8 79000712 79003817 Rops6g02021 6 38140363 38143002 PCT