Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03822 ATGAGGCCTGAGAATGGAGAAGCTCATACACATGATGATACAACTGCTGAAGAGACTAGCACAGACAGGAAAAGAAGCAAACAAAAGGAGAAAGTTGAAAATGTTCCATATCACAAGCTGTTCTCTTTTGCAGACTCCACTGACATCCTGTTGATGATTCTTGGTACCATTGGGGCCATTGGAAATGGTTTAGGTATGCCTATCATGACATTGCTTTTCGGGCAAATGTTTGATAGCTTCGGAAATAACCAGTCTAGTTCCGACGTTGTCAACCAAGTTTCCAAGGTGTCTCTGAAATTTGTATACTTGGGAATAGGCACTGGTGTGGCTGCATTCCTCCAGGTGACTTGCTGGATGGTCACAGGGGAGAGACAGGCTGCAAGAATAAGGGGACTGTATTTGAAAACTATACTGAGACAAGATATTGCTTTCTTTGATAAGGAAACTAACACTGGAGAGGTAACAGGGCGAATGTCAGGTGACACTGTTCTCATACAAGATGCTATGGGCGAGAAGGTTGGGAAATTTTTGCAGCTGATAGCAACATTCTTTGGGGGCTTTGTAATAGCATTTATCAAAGGGTGGCTTCTTACTGTTGTCATGTTGTCCGCTCTTCCACTTCTTGCTGCTTCTGGTGCTGCCATGGCCCTTATCATAGGAAGGATGGCATCCCGAGGACAAAGCGCATATGCAAAAGCTGCACATGTAGTTGAACAGACAATTGGCTCAATAAGAACCGTTGCATCCTTTACTGGAGAAAAGCAAGCACTATCTAGTTATAGAAGATTTCTTGCAGATGCTTACAAATCAGGAGTTCATGAAGGTCTTGTAGCCGGAATGGGTCTTGGCACGGTTACGTTCTTTATTTTCTGTGGTTATGCTTTGGCTGTATGGTTTGGCGCAAAGATGATAATGGAAAAAGGATACGATGGGGGTACGGTGATCAATGTCATTGTTGCTGTGTTAACAGCTTCTATGTCTCTTGGCCAGGCATCTCCTTCCATGAGTGCTTTTGCTGCTGGTCAAGCAGCAGCTTATAAAATGTTTCAGACAATTGAGAGAAAGCCAGAGATAGATGCATACAACCCAAATGGAAAAATATTGAAGGATATTAGTGGTGAAATAGAATTGAGGGATGTTTATTTCAGTTACCCAGCCAGGCCTGAGGAATTGATATTCAATGGATTCTCTCTTCATATACCTAGTGGCACCACTGCTGCTTTAGTAGGACAAAGTGGAAGTGGAAAGTCCACAGTTATCAGTTTGATAGAAAGATTCTATGATCCACAGGCAGGTGAAGTTCTTATTGATGGCATTAAGGTGAAAGAGTTTCAGCTTAGATGGATCAGAGCAAAAATTGGCCTTGTCAGCCAGGAGCCAGTGTTGTTTGCATCTAGCATTAAGGATAACATTGCATATGGAAAGGAGGGAGCAACAATTGAAGAGATAAGAGCTGCTGCTGAACTTGCAAACGCTGCTAAATTCATTGATAAACTGCCACAGGGATTAGACACAATGGTTGGCGAACATGGAACTCAGCTATCTGGTGGGCAAAAGCAGCGCATTGCCATTGCCAGAGCAATCCTGAAAGATCCAAGAATTCTACTTCTTGATGAAGCTACAAGTGCACTTGATGCAGAGTCTGAAAGGATAGTGCAAGAAGCTCTAGACAGGATCATGGTCAACAGAACTACTATTGTTGTTGCGCATCGCCTGAGCACTGTGAGGAATGCTGATATGATCGCTGTAATTCATAGAGGGAAAGTGGTTGAGAAAGGAACACACATAGAATTACTCAAGGATCCTGAGGGAGCTTATTATCAACTCATACGTTTACAAGAAATAAACAAGGAAACAGAAGAAGCTGCTGACAATCAAAACAAAAGTGAACTTTCCTCGGAATCCTTTACAAGATTAAGTAAAAGGAGGTCACTTCGAAGATCAGGATCATCTTTGGGGAATAGTAGCCGCCACTCATTTTCAGTTTCATTTGGTTTACCCACAGGAGTTACCGTCACTGATTCTGAACATGAAAATTCAATGCCTAAAGAACAATCACCAGAGGTTCCACTCCGACGCCTTGCTTCCCTCAACAAGCCAGAGATTCCAGTGCTTCTGATTGGATGTGTAGCTGCCATAGCAAATGGCACCATATTTCCAATATTTGGCGTGTTGTTTTCCAGTGTTATCAAAACATTTTATGAACCATTTCCTGAGATGAAAAAGGATTCCAAGTTCTGGTCTCTAATGTTTGTGACCCTTGGAATTGCATCTTTAGTGGCAAATTCAGCCCGAGGTTACTTTTTCTCTGTGGCTGGCAGTAAGTTAATCCAACGTATCAGGCTGATTTGTTTTGAAAAGGTGATCAACTTGGAAGTTGGTTGGTTTGATGAGCCTGAGCACTCAAGTGGTGCAATTGGTGCAAGGCTCTCAGCAGATGCTGCATTTGTGCGTGCCCTTGTTGGTGATGCCCTGGGACTATTGATTCAAAATATAGCAACAGCATTGACAGGTTTGATTATTGCTTTCATTGCAAGCTGGCAGTTGGCGTTTATTATTCTTGTCTTGCTTCCCTTCATTGGAATGAATGGATATATTCAAATGAAATTCATGAAGGGATTCAGTGCAGATGCAAAGATGAAGTATGAGGAAGCAAGCCAAGTTGCTAATGATGCAGTTGGAAGCATAAGAACAGTAGCTTCTTTCTGTGCTGAAGAGAAGGTTATGGAACTATACCGGAAGAAATGTGAAGGTCCCATGAAAACAGGGATACGACAAGGCTTGATCAGTGGAACAGGATTTGGGGTTTCATTTTTCTTACTCTATAGTGTGTATGCAACCAATTTCTATGCTGGAGCAAGATTTGTGGATGCTGGCAAGGCATCATTCTCAGATGTTTTCCGGGTTTTCTTTGCTTTAACAATGGCAGCTATTGGAATTTCCCAGTCAAGTTCCCTAGCTCCTGATTCTAGCAAAGTTAAGACAGCCACTGCTTCCATATTTGAAATAATTGATAGGAAGTCCAAGATAGATCCAAGCAATGAGTCTGGTAGAACACTGGATAACACAAAGGGAGAAATAGAGTTTCGTCATGTAAGCTTCAAGTATCCATCTAGGCCAGATACACAAATTTTTCGAGACCTTAGCTTGACTATCCATTCTGGCAAGACTGTGGCTCTAGTTGGTGAAAGTGGAAGTGGGAAATCCACAGTGATTGCCTTGCTACAAAGATTTTATGACCCTGATTCTGGTCAAATTACGCTTGATGGGATAGAAATTCAGAATTTTCAGCTCAAGTGGTTAAGGCAGCAGATGGGTCTTGTAAGCCAAGAGCCAGTCTTGTTCAATGACACTATCCGTGCCAATATTGCTTATGGAAAGGAAGGCAATGCAACTGAAGCAGAAATCATAAGTGCAGCAGAACTTGCCAATGCCCATGGTTTTATTAGTTGTTTGCAACAGGGTTATGATACAGTAGTGGGAGAAAGGGGGATCCAACTCTCTGGTGGGCAGAAACAACGTATAGCCATTGCACGTGCTATAATGAAAAAACCAAAGATATTGCTACTTGATGAGGCCACAAGTGCATTAGATGCTGAGTCAGAAAGAGTTGTTCAAGATGCATTAGATAGAGTGATGGCAAACAGGACCACTATGGTTGTGGCACATCGTCTATCTACAATAAAAAATGCTGATATCATTGCTGTGGTTAAAAATGGAGTTATAGTAGAGAAAGGAAGGCACGAGACGCTCATTAACATTAAGGATGGATTTTATGCTTCCTTAGTCCAACTTCATACAAGTGCTGCAACTGTGTGA 3819 0.4216 MRPENGEAHTHDDTTAEETSTDRKRSKQKEKVENVPYHKLFSFADSTDILLMILGTIGAIGNGLGMPIMTLLFGQMFDSFGNNQSSSDVVNQVSKVSLKFVYLGIGTGVAAFLQVTCWMVTGERQAARIRGLYLKTILRQDIAFFDKETNTGEVTGRMSGDTVLIQDAMGEKVGKFLQLIATFFGGFVIAFIKGWLLTVVMLSALPLLAASGAAMALIIGRMASRGQSAYAKAAHVVEQTIGSIRTVASFTGEKQALSSYRRFLADAYKSGVHEGLVAGMGLGTVTFFIFCGYALAVWFGAKMIMEKGYDGGTVINVIVAVLTASMSLGQASPSMSAFAAGQAAAYKMFQTIERKPEIDAYNPNGKILKDISGEIELRDVYFSYPARPEELIFNGFSLHIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIKVKEFQLRWIRAKIGLVSQEPVLFASSIKDNIAYGKEGATIEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTIVVAHRLSTVRNADMIAVIHRGKVVEKGTHIELLKDPEGAYYQLIRLQEINKETEEAADNQNKSELSSESFTRLSKRRSLRRSGSSLGNSSRHSFSVSFGLPTGVTVTDSEHENSMPKEQSPEVPLRRLASLNKPEIPVLLIGCVAAIANGTIFPIFGVLFSSVIKTFYEPFPEMKKDSKFWSLMFVTLGIASLVANSARGYFFSVAGSKLIQRIRLICFEKVINLEVGWFDEPEHSSGAIGARLSADAAFVRALVGDALGLLIQNIATALTGLIIAFIASWQLAFIILVLLPFIGMNGYIQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMELYRKKCEGPMKTGIRQGLISGTGFGVSFFLLYSVYATNFYAGARFVDAGKASFSDVFRVFFALTMAAIGISQSSSLAPDSSKVKTATASIFEIIDRKSKIDPSNESGRTLDNTKGEIEFRHVSFKYPSRPDTQIFRDLSLTIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGQITLDGIEIQNFQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKEGNATEAEIISAAELANAHGFISCLQQGYDTVVGERGIQLSGGQKQRIAIARAIMKKPKILLLDEATSALDAESERVVQDALDRVMANRTTMVVAHRLSTIKNADIIAVVKNGVIVEKGRHETLINIKDGFYASLVQLHTSAATV* 1273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03822 1272 Gene3D ABC transporter type 1, transmembrane domain 98 1001 IPR036640 GO:0005524|GO:0016020
Rops8g03822 1272 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 706 992 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g03822 1272 Pfam ABC transporter 1046 1195 IPR003439 GO:0005524
Rops8g03822 1272 FunFam ABC transporter B family member 9 39 370 - -
Rops8g03822 1272 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 375 611 IPR003439 GO:0005524
Rops8g03822 1272 Coils Coil 609 629 - -
Rops8g03822 1272 CDD ABC_MTABC3_MDL1_MDL2 1027 1265 - -
Rops8g03822 1272 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1027 1264 IPR003439 GO:0005524
Rops8g03822 1272 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 53 340 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g03822 1272 CDD ABC_MTABC3_MDL1_MDL2 375 613 - -
Rops8g03822 1272 FunFam ABC transporter B family member 9 994 1016 - -
Rops8g03822 1272 Gene3D - 373 630 IPR027417 -
Rops8g03822 1272 Gene3D - 1017 1271 IPR027417 -
Rops8g03822 1272 ProSitePatterns ABC transporters family signature. 1167 1181 IPR017871 GO:0005524|GO:0016887
Rops8g03822 1272 FunFam ABC transporter B family member 1 685 993 - -
Rops8g03822 1272 SUPERFAMILY ABC transporter transmembrane region 38 359 IPR036640 GO:0005524|GO:0016020
Rops8g03822 1272 SUPERFAMILY ABC transporter transmembrane region 687 1007 IPR036640 GO:0005524|GO:0016020
Rops8g03822 1272 FunFam ABC transporter B family member 1 365 614 - -
Rops8g03822 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 613 IPR027417 -
Rops8g03822 1272 SMART AAA_5 1054 1227 IPR003593 GO:0016887
Rops8g03822 1272 SMART AAA_5 402 588 IPR003593 GO:0016887
Rops8g03822 1272 Pfam ABC transporter transmembrane region 705 977 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g03822 1272 Pfam ABC transporter transmembrane region 52 326 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g03822 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1017 1265 IPR027417 -
Rops8g03822 1272 PANTHER ABC TRANSPORTER B FAMILY 12 616 IPR039421 -
Rops8g03822 1272 ProSitePatterns ABC transporters family signature. 514 528 IPR017871 GO:0005524|GO:0016887
Rops8g03822 1272 CDD ABC_6TM_Pgp_ABCB1_D1_like 52 336 - -
Rops8g03822 1272 MobiDBLite consensus disorder prediction 1 30 - -
Rops8g03822 1272 CDD ABC_6TM_Pgp_ABCB1_D2_like 695 1010 - -
Rops8g03822 1272 FunFam ABC transporter B family member 1 1017 1267 - -
Rops8g03822 1272 Pfam ABC transporter 394 542 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03822 Rops-Chr8 78908278 78913738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03822 28 1266 Calmodulin-binding Proteins AT2G36910 44.968 0.0 1071
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03822 K05658 - gmx:100802547 2097.4