Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03819 ATGGAAGATGAACCTTTTGTGGCAATTGAGCGTCGTGATTTACCCTTTTCAGCTTCCAAGTCCTTCAACGATGTTACCACCTTGCAAGAAGCCCCACGAGCAAGAAGAGAGGCAGAGATAGAATCCTGCACGGAACAACACCACCAACCATTGCTTCCAAAGAAGAAACTCACTCGTTGTAAAACAGCCCCTGCCATGGTTGTCATGAGAGACCTCATACCTAAGACAACTGAAGTTCCAAAGCCTCAAACTAGTTCTATTATCAGACAAGGCATCTGGTTGTTTCTTATATATCTCTCTGTTGGGGTGGCTATATATTCTTTCAACAAGGACCGTTTTTCTGGCATAGAGACTCACCCTGTAGTGGATGCACTTTACTTTTGTATAGTTACCATGTGTACCATAGGTTATGGGGACATAGCTCCTTTAACCCCATTTACAAAGCTCTTTGCTTGTTTTTTTGTCTTGGTGGGGTTTGGATTTATAGACATACTACTTAGTGGGCTTGTAAATTTTGTCCTAGATTTGCAGGAGAACATGATTCTAACGGGTTTACAAATGGGTGCTAGGGAAGGTTTCTCTGCAAGGGATTACATAGTTGATGTGGCAAAGGGTAGGATGAGGATTAGATTGAAGGTTGGTTTGGCACTTGGTGTTGTGGTTCTGTGTATTGGGATTGGGAGTTTGGTGTTGTACTTTGTGGAGGGTTTGGATTTGGTTGATTCAATTTACTTGTCGGTTATGTCGGTGACAACGGTTGGTTATGGAGACAGAGTCTTCAAGACCCTTCCGGGTAGGTTATTTGCGGCTATTTGGCTCCTGTTTTCAACATTGATGGTGGCACGGGCCTTCCTCTATTTGGCAGAGGCAAGAATTGATAGAAGGCATAGGAGAATGGCCAAGAAGGTGTTGCAGAGAGAAATAACTATTGATGATTTGATTGCTGCTGATATCAACCACACTGGTTTTATAAGTAAGTCAGAGTATATAATCTTCAAGCTGAAAGAGATGGGTAAAATAAGGGACAAAGATGTGTTGCAAATTTGTGATCAATTCATGAAGCTTGACCCCTCTAACTGTGGGAAGATAACATTACCTCATCTCTTGGAGGGCAGGTATTGA 1122 0.4242 MEDEPFVAIERRDLPFSASKSFNDVTTLQEAPRARREAEIESCTEQHHQPLLPKKKLTRCKTAPAMVVMRDLIPKTTEVPKPQTSSIIRQGIWLFLIYLSVGVAIYSFNKDRFSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPFTKLFACFFVLVGFGFIDILLSGLVNFVLDLQENMILTGLQMGAREGFSARDYIVDVAKGRMRIRLKVGLALGVVVLCIGIGSLVLYFVEGLDLVDSIYLSVMSVTTVGYGDRVFKTLPGRLFAAIWLLFSTLMVARAFLYLAEARIDRRHRRMAKKVLQREITIDDLIAADINHTGFISKSEYIIFKLKEMGKIRDKDVLQICDQFMKLDPSNCGKITLPHLLEGRY* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03819 373 SUPERFAMILY Voltage-gated potassium channels 203 309 - -
Rops8g03819 373 Gene3D - 197 315 - -
Rops8g03819 373 Gene3D - 66 184 - -
Rops8g03819 373 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 122 346 IPR003280 GO:0005267|GO:0016020|GO:0071805
Rops8g03819 373 ProSitePatterns EF-hand calcium-binding domain. 317 329 IPR018247 -
Rops8g03819 373 FunFam Two-pore potassium channel 3 196 310 - -
Rops8g03819 373 SUPERFAMILY Voltage-gated potassium channels 79 173 - -
Rops8g03819 373 Pfam Ion channel 94 173 IPR013099 -
Rops8g03819 373 Pfam Ion channel 221 289 IPR013099 -
Rops8g03819 373 PRINTS Two pore domain K+ channel signature 130 158 IPR003280 GO:0005267|GO:0016020|GO:0071805
Rops8g03819 373 PRINTS Two pore domain K+ channel signature 251 260 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03819 Rops-Chr8 78866057 78868213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03819 28 369 Ion Channels AT4G01840 65.429 1.54e-159 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03819 K05389 - gmx:100801488 580.096