Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03815 ATGTCGGGAAAAGTAATTATCTCCGCTGTTTCTCTCATCCTCGTAGTAGGTGTTGCTCTCGGCGTTGTTGTTGCGGTTAACAAGAAGAATGAAGATCCTCAGGTTCAATCTCAACAAAAGTCTGTAAGGGCCATTTGCGAAAACACAGATGACCAAAAACTCTGCCATCAAACTCTCAGTTCTGTGCACTCTTCTTCAGACCCAAAGGATTACATAGCTGCTGCTGTGAAAGCAACCACAGAATCTGTCATCAAGGCCTTTAACATCAGTGACAGGCTCACAGTCGAGCATGGATCCAACGACCATGGTGTCAAGATGGCCCTTGATGATTGCAACGACTTGTTGCAATCTGCTATGGACAGCCTTCAACTTTCCACCGACTTGGTTCGTGAAAACAACATCCAAACCGTGCACCTGCAAACCCCTGATCTCAGGAACTGGTTGAGTGCAGTTATCTCATACCAACAAACTTGCATGGAAGGCTTTGACACTGGCAAAGACGGTGAGAAAAAAATCAAGGAGATCTTCCATACTTCTAGTTTGGATCAAGTGGAGAAGATCACTGGCATCACCCTTGACATTGTGAGTAGTTTGACCAAAATCCTTGAGCAATTCAACTTGAAGTTGGATCTCAAACCTGCCTCTCGTCGCCTTCTTGGTGTGGAGGTTGATAACCAAGGATACCCCTCTTGGTTCTCTGCCTCTGATCGCAAGCTTTTGGCTCAGCTTCAAGCTAAAGGTTGGAGATCTCGTATCAAGCCCAATGTTGTGGTTGCCAAGGATGGTTCTGGTCAATTCAAAACCATCATTGATGCTATTAACTCCTACCCTAAGGACTTCAATGGTAGATTCAACATCTATGTCAAGGCTGGTGTCTATGATGAGTACATCACTGTCCCCAAATACGCAAAGAACATTCTCATGTATGGTGATGGCCCTGCAAAAACCATTGTCACCGGTCGTAAGAACTTTGCTGAGGGTGTCAAGACCATGCAAACCGCCACCTTCGCCAACACTGCTGATGGATTCATCGGTAAGGCAATGACATTTGAGAACACAGCTGGTGCTGAAGGTCATCAAGCCGTGGCTCTTAGAAACCAGGGAGACATGTCTGCTTTCGTGGGTTGCCACATCTTGGGTTACCAAGATACCTTGTATGCTCAAACCAATCGTCAATTCTACCGCAACTGTGTGATCACTGGTACCATTGACTTCATCTTTGGTGTGTCCACCACCTTGATCCAGCACTCTGTCATCATTGTGAGGAAACCAATGGACAACCAACTCAACACAGTGACCGCAGACGGCACAGCACAGAAGAGTATGTCCACAGGTATTGTGATCCAGGATTGCAATATAGTCCCTGAACAAGCATTGTTCCCTGTGAGGTTCCAAATCAAATCCTACTTGGGAAGACCATGGAAGCAATACTCAAGGACAGTGATCATGGAATCTACTCTTGGTGACTTCATTCATCCAGAGGGGTGGTATCCTTGGGATGGTTCAAATTTCCTTGACACCTTGTACTATGCTGAGTATGCTAACAGTGGACCTGGTGCCAATGTTCAAGGAAGGATCAAGTGGAAGGGTTACCGTGGCCTCATTAGCCAGGCTGAAGCTACCCAATTCACTGCATCTGAATTCCTCAAGGCTGGACCCAATTCTGGAACTAATTGGTTGAAGGCTCTTCATGTTCCTCACTACCTTGGCTTCAAGAATTGA 1722 0.4611 MSGKVIISAVSLILVVGVALGVVVAVNKKNEDPQVQSQQKSVRAICENTDDQKLCHQTLSSVHSSSDPKDYIAAAVKATTESVIKAFNISDRLTVEHGSNDHGVKMALDDCNDLLQSAMDSLQLSTDLVRENNIQTVHLQTPDLRNWLSAVISYQQTCMEGFDTGKDGEKKIKEIFHTSSLDQVEKITGITLDIVSSLTKILEQFNLKLDLKPASRRLLGVEVDNQGYPSWFSASDRKLLAQLQAKGWRSRIKPNVVVAKDGSGQFKTIIDAINSYPKDFNGRFNIYVKAGVYDEYITVPKYAKNILMYGDGPAKTIVTGRKNFAEGVKTMQTATFANTADGFIGKAMTFENTAGAEGHQAVALRNQGDMSAFVGCHILGYQDTLYAQTNRQFYRNCVITGTIDFIFGVSTTLIQHSVIIVRKPMDNQLNTVTADGTAQKSMSTGIVIQDCNIVPEQALFPVRFQIKSYLGRPWKQYSRTVIMESTLGDFIHPEGWYPWDGSNFLDTLYYAEYANSGPGANVQGRIKWKGYRGLISQAEATQFTASEFLKAGPNSGTNWLKALHVPHYLGFKN* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03815 573 Gene3D - 249 571 IPR012334 -
Rops8g03815 573 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 200 IPR035513 -
Rops8g03815 573 NCBIfam pectinesterase inhibitor domain 18 198 IPR006501 GO:0004857
Rops8g03815 573 SUPERFAMILY Pectin lyase-like 251 567 IPR011050 -
Rops8g03815 573 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 199 IPR035513 -
Rops8g03815 573 CDD PMEI-like_3 44 200 - -
Rops8g03815 573 FunFam Pectinesterase 38 199 - -
Rops8g03815 573 SMART PMEI_2 37 194 IPR006501 GO:0004857
Rops8g03815 573 Pfam Plant invertase/pectin methylesterase inhibitor 41 194 IPR006501 GO:0004857
Rops8g03815 573 PANTHER PECTINESTERASE 16 561 - -
Rops8g03815 573 Pfam Pectinesterase 255 550 IPR000070 GO:0030599|GO:0042545
Rops8g03815 573 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Rops8g03815 573 FunFam Pectinesterase 249 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03815 Rops-Chr8 78828399 78830481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03815 4 572 Carbohydrate Esterase AT5G49180 39.931 1.38e-138 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03815 K01051 - gmx:100781507 870.537