LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g03812	ATGTTTCCTTCCTCAACAAGTGACATTGAACTTCATATTATCAAGTTCTTTGAAACTGATTTTATCGTTTATTTCGATTTCAATGGTGTAAGGATCTCACCCTATCTGAGTGCCCCTTCTTCACCAAAGCGATTTGGGGAATTTTACAACTTATCAGCTCCCACAAGCCCATCAAGGTCTTATAGCGAATTTGATTACTTTTCTCCTTCAAACCTTTATGACTGGGAACAAAAACCCGGTACCCCAAAAGGTGGCAATGATGATGGTGGTGATGGTTTTGCCTTCTTTGTAAGTGATGAATCAGAGATACCATCTCGTTCAGCTGAAGAGCTCTTTGATGGTGGCAAGATCAAGCCTTTGAAAGATGATGAATCATTGGAATCTGTTAAAAGCCCACTTCTGTCTCCTAGTAGACCCAGAAGATCTCCAATGGCACAAGGGAAGAAGGTGATTCGTGAAGCTTTTTCACCCAGGAAGAAGAAAGAGACGGAAGGTGAAGAGAGAAGAGGCAGGGATATGATTTCTTCAGCTAAATCTGAACAACAAGAGGAACCTAATTCTATTCCCACAACTGTTTCACTTTCATCCACTTCTTCTTCGAAGAGTTCTAGAAAATGGAGATTGAGGGATTTCTTGTTGTTCCGTAGTGCCTCAGAAGGGAGAGGTACCAGCAAGGACCCATTAACAAAGTACCCTCTTTTTCACAAGAAACCTGAAGAAGGAAAAGGTTCTAGCTTTAGATCCTCTGATAATCCTCCCAGATTAGTTGTACCAAAAGTCCTGCGTGGAATAAAATCATTACCAGATCATCATTTCAATTCCAAGCAAGTCGATCACTTCGACCGCCTTATCCTACGCACTCCTCGCTGCTTATCCTGCGCACATTTCGCCGGTTTCGTAGCCAAGATCTTCAACTACCTCCTCGGCGCTCTCACTTTCTCAACTACACAGTTTTCCTATTGGATTTCAGTGGAAAGAATCATGAGTTGTTTCAGCTGTTGTGAAGAAGATGACTTCCACGGGACTGCTGAAAGTGGAGGACAATATGTGGCGAAAAACTCAGGAAATGATGGGAATTATCATGCTTCTGAAACAGCAAAGCAGGGTGCTCAAACTGTTAAAATTCAGCCCATTGAAGTTCCTGAATTACCGGTGGATGAACTCAAAGAAATTACAGATAACTTTGGAGAAAGTTCTCTGATTGGAGAGGGATCCTATGGAAGAGTATATTATGGTGTTCTCAAAAGTGGGCCGGCTGCAGCAATCAAGAAATTAGATGCCAGTAAACAGCCTGATGACGAATTTTTAGCCCAGGTATCAATGGTTTCACGGCTGAAGCATGACAATTTTGTCCAATTGCTTGGTTATTGTGTTGATGGAAGCTCCCGAGTTCTTGCTTATGAGTTTGCATCTAATGGGTCTCTTCATGATATTTTACATGGCAGAAAAGGTGTTAAAGGGGCACAGCCTGGTCCTGTTCTATCATGGGCCCAGAGAGTTAAAATTGCTGTAGGGGCTGCAAAAGGGCTTGAGTACTTGCATGAGAAGGCTGATCCCCACATTATCCACCGGGACATCAAGTCAAGCAATGTACTAATCTTTGATGATGATGTTGCTAAAATTGCAGACTTTGATTTGTCAAATCAGGCTCCTGACATGGCAGCACGTCTTCATTCCACCCGTGTCCTTGGAACCTTTGGTTATCATGCACCGGAATATGCAATGACTGGGCAATTGAATGCTAAGAGTGATGTATACAGCTTTGGTGTTGTCCTTCTGGAACTTTTGACTGGAAGGAAGCCTGTTGATCACACACTACCACGTGGGCAGCAGAGCCTTGTTACTTGGGCTACACCAAAACTCAGTGAGGATAAAGTCAGACAGTGTGTAGATGCAAGACTAGGAGGAGATTACCCGCCCAAAGCTGTTGCCAAGATGGCTGCCGTTGCTGCATTGTGTGTGCAATATGAAGCTGATTTCAGACCAAACATGAGCATTGTAGTCAAAGCTCTTCAGCCTTTGTTGAATGCAAGACATGGACCTGCTGGTGAAACACCAAACTAA	2064	0.4331	MFPSSTSDIELHIIKFFETDFIVYFDFNGVRISPYLSAPSSPKRFGEFYNLSAPTSPSRSYSEFDYFSPSNLYDWEQKPGTPKGGNDDGGDGFAFFVSDESEIPSRSAEELFDGGKIKPLKDDESLESVKSPLLSPSRPRRSPMAQGKKVIREAFSPRKKKETEGEERRGRDMISSAKSEQQEEPNSIPTTVSLSSTSSSKSSRKWRLRDFLLFRSASEGRGTSKDPLTKYPLFHKKPEEGKGSSFRSSDNPPRLVVPKVLRGIKSLPDHHFNSKQVDHFDRLILRTPRCLSCAHFAGFVAKIFNYLLGALTFSTTQFSYWISVERIMSCFSCCEEDDFHGTAESGGQYVAKNSGNDGNYHASETAKQGAQTVKIQPIEVPELPVDELKEITDNFGESSLIGEGSYGRVYYGVLKSGPAAAIKKLDASKQPDDEFLAQVSMVSRLKHDNFVQLLGYCVDGSSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGDYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLNARHGPAGETPN*	688

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops8g03812	687	PANTHER	PTO-INTERACTING PROTEIN 1-LIKE	331	678	-	-
	Rops8g03812	687	Gene3D	Transferase(Phosphotransferase) domain 1	470	681	-	-
	Rops8g03812	687	MobiDBLite	consensus disorder prediction	179	199	-	-
	Rops8g03812	687	MobiDBLite	consensus disorder prediction	105	128	-	-
	Rops8g03812	687	Gene3D	Phosphorylase Kinase; domain 1	356	469	-	-
	Rops8g03812	687	Pfam	Protein tyrosine and serine/threonine kinase	400	671	IPR001245	GO:0004672\|GO:0006468
	Rops8g03812	687	SUPERFAMILY	Protein kinase-like (PK-like)	374	671	IPR011009	-
	Rops8g03812	687	MobiDBLite	consensus disorder prediction	105	199	-	-
	Rops8g03812	687	ProSiteProfiles	Protein kinase domain profile.	395	675	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops8g03812	687	CDD	STKc_IRAK	401	674	-	-
	Rops8g03812	687	MobiDBLite	consensus disorder prediction	230	244	-	-
	Rops8g03812	687	MobiDBLite	consensus disorder prediction	221	250	-	-
	Rops8g03812	687	SMART	serkin_6	395	675	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops8g03812	687	ProSitePatterns	Protein kinases ATP-binding region signature.	401	424	IPR017441	GO:0005524
	Rops8g03812	687	FunFam	pto-interacting protein 1	471	682	-	-
	Rops8g03812	687	FunFam	PTI1-like tyrosine-protein kinase 3	359	469	-	-
	Rops8g03812	687	MobiDBLite	consensus disorder prediction	152	178	-	-
	Rops8g03812	687	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	521	533	IPR008271	GO:0004672\|GO:0006468
	Rops8g03812	687	Pfam	Protein of unknown function (DUF1645)	108	251	IPR012442	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops8g03812	Rops-Chr8	78791241	78803438	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops8g03812	383	672	Receptor kinase-like Gene Family	AT4G02010	51.361	2.91e-87	287

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIII	Rops8g03812		PK_Tyr_Ser-Thr	1.7e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g03812	K13436		-	gmx:100499642	671.774