Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03811 ATGATGGGAGCTAGATTTGGTGGAGAAGCTTTTCCTTTATATGGTGTTGTGGGGGGTTCCTCTGATCCGGGGAAGAGGTCCATGGAGTGGGATTTGAATGATTGGAAATGGGATGGTGATCTTTTCATAGCTAGGAGGCTAAGTGCAGTTCCAGAACATAGGCAACTTTTCCCTATGCCTGTAACTGGGGGTCCCTCAAACTCGAACAGTTCATCTTCTTGCTCTGATGAGGTAGATCTTGAGAACAAGGAAGGGGAGAGGAAGAGGAGGGTTATTGTGCTTGATGATGAAATGGGTTTGAATGAGGAAGCAGGTAGCCTTAGCTTAAAGCTTGGTGCTGGGCGTGGTAGTAATAGTGGTCTTCCTACTCCAATTGCAAACTGGGAAGGAACCAACTTGAAGAAAAGCAGAGTAGGTGGAGGTACTTCCAGTCGAGCACTATGTCAGGTGGAGGATTGTGGTGCAGATCTCACCAACGCTAAAGATTATCACAGACGACATAAGGTTTGTGAGATGCACTCCAAGGCTAGTAAGGCCCTTGTGGGAAATGCAATGCAGAGGTTCTGCCAACAATGTAGTAGGTTTCACTTGCTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGTCGAAGACGTTTGGCAGGCCATAATAAACGAAGGAGGAAAACAAATCAGGATGCTGTTCCTAATGGAAATTCACTAAATGATGATCAAACTAGTAGTTATCTGTTGATAAGTTTATTGAAGATCCTTACAAATATGCATTCTGACAGGTCAGATCAGACCACGGATCAGGATATGCTAACTCATCTTTTAAGGAGTCTTGCTAATCAGAATGGTGAACAAGGGGGCAAAAACTTGTCTAACCTTCTGCGAGAACCAGAGAATTTGTTGAAAGAAGGAAGTTCATCTGGGAAGTCCAAGATGGTTTCTACTTTATTCACAAATGGTTCTCAAGCCTCCCCAACTGTTACAAGACAGCATCAAGCAGTTTCTATTAGCGAAATTCAGCATCAAGTGATGCATGCACATGATGCTATGGGTGCTGATCAACAAACCATGTCTTCTACAAAGCCCAGCATTTCAAACAGCCCTCCGGCTTACTCAGAAGCCAGAGACAGTGCTGCTGGACAGACCAAGATGAATAATTTTGATCTGAATGACATATATATTGACTCAGATGATGGCATAGAAGACATAGAAAGGTTGCCTGTCTCTGCAAATCTTGGTACTAGCTCTCTTGATTACCCATGGATGCAACATGATTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCCGCCCAGTCCACTTCTAGTTCCAGTGGAGAAGCACAGAGTCGCACAGATCGTATTGTTTTTAAACTCTTTGGTAAAGAACCAAATGAGTTTCCTCTCGTGCTTAGAGCACAGATTCTTGACTGGTTATCACACAGTCCTAGTGATATCGAGAGCTACATTCGGCCTGGTTGTATTGTTTTGACTATTTATCTGCGTCAGGCTGAGGCCATATGGGAGGAACTTTGCTATGATCTGACTTCCAGTTTGAATAGGCTTCTGGATGTCTCAGATGATGTTTTTTGGAGAACTGGATGGGTTCACATCAGGGTGCAACATCAGATAGCCTTCATTTTCAATGGTCAGGTTGTCGTAGATACATCCTTGCCTTTCAAAAGTAACAATTGTAGTAAGATTTTGAGTGTAAGTCCAATTGCTGTACCAGCATCAAAGAAAGCTCAATTTTCTGTCAAGGGTATCAACCTGATTCGCCCTGCCACTAGGTTATTGTGTGCTTTAGAAGGGAATTATCTGTTATGTGAAGATGCTCAAGAGTCTATGGATCAACACTCCAAGGATATTCATGAGCTTCAGTGCATCCAGTTTTCTTGTTCTGTCCCTGTGATCGATGGAAGGGGATTTATCGAGATTGAGGACCAAGGTTTGAGCAGCAGCTTTTTTCCTTTCATAGTCGTGGAGGAGGATGTTTGCTCTGAAATCTGTGCGCTTGAGCCTTTACTAGAATTAAGTGATGCTGATCCAGATACTGAAGGGGCTGGAAAAATTAATGCTAAAAATCAAGCCATGGATTTCATTCATGAAATGGGTTGGCTTCTCCACAGAAGCCACTTGAAATCTAGGATGGTTGACTTAAACTCTGGTGCAGATCTTTTTCCATTAAATCGATTCAAGTGGCTCATGGAGTTCTCTGTGGATCATGATTGGTGTGCAGTAGTTAAAAAACTATTGAACCTCCTGCTTGATGGAGCTGTGCATACAGGAGATCACCTTTCCCTGTATCTTGTACTTTCAGAGCTTGGTCTCCTTCACAAAGCTGTAAGGAGAAATAGCAGGCAATTGGTGGAGATGCTTTTGAGATATGTTCCTGAGAATATTTCTGATAAACTAGGACCTGAAGACAAGGCACAGGTTGGTGGAGAGAACCAAAGCTTCTTGTTTAGACCTGATGATGTTGGTCCTGCTGGTTTGACACCACTCCATATAGCAGCTGGGAAAGATGGTTCTGAGGATGTGCTGGATGCTTTAACTAATGATCCTTGCATGGGGGGAATTGAAGCATGGAAGAGTGCTCACGACAGCACGGGCTCTACACCTGAGGATTATGCACGTTTACGTGGCCATTATGCTTACATTCACTTGGTGCAAAAGAAAATCAACAGGAGACGTGGAGGGGCTCATGTGGTGGTTGAGATTCCCAGCAATCTGACAAGTTTCAATGCAAATCAGAAGCAAGATGAATTGTCCACTAGCTTTGAGATTGATAAGACTGAAGTCAGAAGTGCCCAAAAGCAGTGCAAACTTTGTGATCATAAGTTATCTTGTAGAACTGCTGTTGGCAACAGGTCTTTGGTATACAGACCTGCAATGCTGTCAATGGTTGCCGTAGCAGCAGTGTGTGTTTGTGTGGCTCTTCTGTTTAAAAGCTCACCCGAAGTTCTGTATGTATTCCAACCCTTCAGGTGGGAATCATTGGAGTTTGGAACAAGCTGA 3021 0.4343 MMGARFGGEAFPLYGVVGGSSDPGKRSMEWDLNDWKWDGDLFIARRLSAVPEHRQLFPMPVTGGPSNSNSSSSCSDEVDLENKEGERKRRVIVLDDEMGLNEEAGSLSLKLGAGRGSNSGLPTPIANWEGTNLKKSRVGGGTSSRALCQVEDCGADLTNAKDYHRRHKVCEMHSKASKALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNQDAVPNGNSLNDDQTSSYLLISLLKILTNMHSDRSDQTTDQDMLTHLLRSLANQNGEQGGKNLSNLLREPENLLKEGSSSGKSKMVSTLFTNGSQASPTVTRQHQAVSISEIQHQVMHAHDAMGADQQTMSSTKPSISNSPPAYSEARDSAAGQTKMNNFDLNDIYIDSDDGIEDIERLPVSANLGTSSLDYPWMQHDSHQSSPPQTSGNSDSASAQSTSSSSGEAQSRTDRIVFKLFGKEPNEFPLVLRAQILDWLSHSPSDIESYIRPGCIVLTIYLRQAEAIWEELCYDLTSSLNRLLDVSDDVFWRTGWVHIRVQHQIAFIFNGQVVVDTSLPFKSNNCSKILSVSPIAVPASKKAQFSVKGINLIRPATRLLCALEGNYLLCEDAQESMDQHSKDIHELQCIQFSCSVPVIDGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICALEPLLELSDADPDTEGAGKINAKNQAMDFIHEMGWLLHRSHLKSRMVDLNSGADLFPLNRFKWLMEFSVDHDWCAVVKKLLNLLLDGAVHTGDHLSLYLVLSELGLLHKAVRRNSRQLVEMLLRYVPENISDKLGPEDKAQVGGENQSFLFRPDDVGPAGLTPLHIAAGKDGSEDVLDALTNDPCMGGIEAWKSAHDSTGSTPEDYARLRGHYAYIHLVQKKINRRRGGAHVVVEIPSNLTSFNANQKQDELSTSFEIDKTEVRSAQKQCKLCDHKLSCRTAVGNRSLVYRPAMLSMVAVAAVCVCVALLFKSSPEVLYVFQPFRWESLEFGTS* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03811 1006 MobiDBLite consensus disorder prediction 346 379 - -
Rops8g03811 1006 Pfam SBP domain 148 221 IPR004333 GO:0003677
Rops8g03811 1006 MobiDBLite consensus disorder prediction 413 450 - -
Rops8g03811 1006 FunFam Squamosa promoter-binding-like protein 14 139 209 - -
Rops8g03811 1006 Gene3D - 738 926 IPR036770 -
Rops8g03811 1006 MobiDBLite consensus disorder prediction 348 379 - -
Rops8g03811 1006 MobiDBLite consensus disorder prediction 61 76 - -
Rops8g03811 1006 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677
Rops8g03811 1006 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 84 874 IPR044817 GO:0003677
Rops8g03811 1006 SUPERFAMILY Ankyrin repeat 746 891 IPR036770 -
Rops8g03811 1006 Coils Coil 610 630 - -
Rops8g03811 1006 SUPERFAMILY SBT domain 146 226 IPR036893 GO:0003677|GO:0005634
Rops8g03811 1006 Gene3D - 139 209 IPR036893 GO:0003677|GO:0005634
Rops8g03811 1006 MobiDBLite consensus disorder prediction 212 234 - -
Rops8g03811 1006 MobiDBLite consensus disorder prediction 58 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03811 Rops-Chr8 78766259 78774732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03811 2 1006 SBP-box Gene Family AT3G60030 54.921 0.0 973
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops8g03811 SBP 1.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03811 - - gmx:100809806 1586.24