Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03808 ATGGACGATTGTTGTGCTGTTTGCGCGGAACCCTTGGAATGGGTTGCGTATGGACCTTGTTTGCACCGTGAGGTTTGCTCCACCTGTGTGGCTCGTCTCCGTTTCATATGTGACGATCGCCGATGCTGTATTTGCAAGACCGAATGCAACCTCGTATTTGTTACCAAGGCTCTAGGAGATTATACAAGGATGATTAATGACTTTTCATCCATGCCGATTGAGGTAAGGGAAGGCAAGGTTGGACCATACTGGTACCACGAGGATACAAATGCATTTTTCGATGATGTGGACCATTACAAGATGATCAAGGCTATGTGCAGGCTTTCATGCAATGTATGTGACAAGATGGAGGAGCAACCGCATGATGCTTCAAGGAGACGAGCGAGGTTTAGGAATATAGGGCAGCTGAAGGGTCACTTATTCCACCGTCATAAGTTGCATATGTGCAGCTTGTGTTTGGAGGGGAGGAAGGTATTTATATGTGAGCAAAAATTATATACTAGAGCACAGTTGAATCAACACATAAGCACAGGTGATTCTGAGGTGGATGGAAGTGAGAGTGAGAGAGGTGGCTTTATGGGGCATCCTATGTGTGAATTCTGCAGAACCCCATTTTATGGGGACAATGAACTATACACACATATGTCTACAGAACATTATACTTGTCATATATGCCAAAGGCAGCATCCAGGACAGTATGAATACTACAAGAATTATGATGACCTAGAGATCCACTTTCGTCAAGATCACTTCTTATGTGAAGATGAGGCATGCCTTGCTAAGAAATTTGTTGTTTTTCAATCTGAAGCAGAGATGAAGAGGCACAATGCCATCGAACATGGAGGGCGAATGTCACGGTCAAAGCGTAATGCTGCTCTTCAGATACCAACTAGCTTTCGATACAGACATGGTAATGAACAGGACCAACCCCGTGGAAGAGGTCTTACATTTCGTCGTGATCAACTTTCTATGGCCATTGAAGCCAGTTTGGAGACAGCTAATGCCGAGCAAACGTTTCATAATCCATCAACATCAAGTACTGGAGAAATTTTTGTTAATGATGAGAGTGCTGATATTGATTCTATCATTCAGCCGTTTGAATCATTAACTACAGCAGGTTCTGAGTCATCTGCAAGATACCTTCAAGCCTTAGGGAACTCTAGGAATGCACCTCTGGGAGATTCTTCCTTTCCTCCGCTTCCCATAGCTTCCAGCAATGGCCAGCAAAGGTCCAAACATGAGGTGGAAGGTTCATCTAGTAACACTATGGCAGCACATTTGCGCCGGCATAGCAACAGAAATGTAACTGTTATTAATTCTGGTCATGCCTGGTCTGCAGCAGGTCGTGGACCTGTACAATCATCAAGTAATCCTTCACAATCTAAACTGCCAACAAATCTTGCTCCTGGATTGTCTCGTAATTCTGGTCAGATGAAGACAGTAATTAACAATGGACTTCCACCATCAACCTATGCTAGTTCTATTCAGGCTGCACATAGAACTGTTCATGGACAATTACCTGCTGGTTCATCGAGGGACACACGTGACAGTGGCAGAATAGTTCACTCTGCATCTGCACCAAACCTCATCGAGAACAATCCCGTTGAAGTTTCAATTTCCGATTTTCCTCCAGTTTCTTCTGCACAAGTGAGTAAGTTACCTACAAGCAGCCAGCCTGTGTTGAATGTGGAGAAGGTTCAGTCTGCTAACAAGTCCTTGGTTGAAAAGATTCGCAGTGCTCTTGATTTTGATGAAGATAGATACACTATATTTAAAGACATATCTTCTCAATATCGCCAAGGCACAATAGATACTGGAACATATCTGGATTATGTACAGCAGTTTGGCTTGTCTCATCTTGTGCTTGAGTTAGCAAAACTATGCCCGGATGCTCAGAAGCAGAAAGAACTTATTGAGTCTTACAACTCAAGTTTGCAAAGAAATGCTTTACAAGAAAATGACTGGGTTTCTGGTAGCTCTGGGTATCGTAAGGACAGTAATGTCAACAAGAAAGGTAAAGGTAAGGCTGTAGATAGTAGGGGGAGGAGTAACTCTACAGAGAGACTAGCAGATAGCTTTTTAAGCACTGTACATCAACTGCAGTCGAATTATAAACCTTCAGAAGAGAAGTTGGAGGTGCTATCAAAGGGTGATTACCGCACTGACAAAGACAAGTTAAAAATTGAGCAGCAGATTGATAAAAACCCTGGTAGTCAACCTAAGATGAAGCTTAGTGGGCAGACTGAATCATCAAATGGCAATTTATCTAATCAAAATAGAGAGGATGCGGGAGGTGGGAACAAGCAACGCAAAAAAGCTTCCAAGTTCCTCAGAGTGCGGCTTGGTGATGGTTCTGCTTCGGCCTTTATAGATCGTGAAAACTCACGCACCGAATCAGATCCTGGAACAACAGACGGTTTAGAAGGCAACAAGAATGACTCTGGAGGAGGGCTGCCTGTACGAGGTGTTTGGCGAAATGGGGGAGGTCATAAACTCTTTTCATAA 2505 0.4347 MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDDRRCCICKTECNLVFVTKALGDYTRMINDFSSMPIEVREGKVGPYWYHEDTNAFFDDVDHYKMIKAMCRLSCNVCDKMEEQPHDASRRRARFRNIGQLKGHLFHRHKLHMCSLCLEGRKVFICEQKLYTRAQLNQHISTGDSEVDGSESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRQDHFLCEDEACLAKKFVVFQSEAEMKRHNAIEHGGRMSRSKRNAALQIPTSFRYRHGNEQDQPRGRGLTFRRDQLSMAIEASLETANAEQTFHNPSTSSTGEIFVNDESADIDSIIQPFESLTTAGSESSARYLQALGNSRNAPLGDSSFPPLPIASSNGQQRSKHEVEGSSSNTMAAHLRRHSNRNVTVINSGHAWSAAGRGPVQSSSNPSQSKLPTNLAPGLSRNSGQMKTVINNGLPPSTYASSIQAAHRTVHGQLPAGSSRDTRDSGRIVHSASAPNLIENNPVEVSISDFPPVSSAQVSKLPTSSQPVLNVEKVQSANKSLVEKIRSALDFDEDRYTIFKDISSQYRQGTIDTGTYLDYVQQFGLSHLVLELAKLCPDAQKQKELIESYNSSLQRNALQENDWVSGSSGYRKDSNVNKKGKGKAVDSRGRSNSTERLADSFLSTVHQLQSNYKPSEEKLEVLSKGDYRTDKDKLKIEQQIDKNPGSQPKMKLSGQTESSNGNLSNQNREDAGGGNKQRKKASKFLRVRLGDGSASAFIDRENSRTESDPGTTDGLEGNKNDSGGGLPVRGVWRNGGGHKLFS* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03808 834 SMART c2h2final6 108 144 IPR013087 -
Rops8g03808 834 SMART c2h2final6 196 219 IPR013087 -
Rops8g03808 834 SMART c2h2final6 251 280 IPR013087 -
Rops8g03808 834 SMART c2h2final6 220 250 IPR013087 -
Rops8g03808 834 MobiDBLite consensus disorder prediction 498 518 - -
Rops8g03808 834 CDD RING-HC_ZNF598 3 54 IPR041888 -
Rops8g03808 834 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Rops8g03808 834 MobiDBLite consensus disorder prediction 666 685 - -
Rops8g03808 834 MobiDBLite consensus disorder prediction 390 421 - -
Rops8g03808 834 MobiDBLite consensus disorder prediction 449 473 - -
Rops8g03808 834 PANTHER ZINC FINGER PROTEIN 598 1 731 IPR044288 GO:0061630|GO:0072344
Rops8g03808 834 MobiDBLite consensus disorder prediction 656 690 - -
Rops8g03808 834 MobiDBLite consensus disorder prediction 722 834 - -
Rops8g03808 834 MobiDBLite consensus disorder prediction 445 473 - -
Rops8g03808 834 MobiDBLite consensus disorder prediction 732 763 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03808 1 834 C2H2 Transcription Factor Family AT3G62240 53.502 0.0 846
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03808 K22381 - gmx:100799878 1399.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03808 8 78735070 78739230 Rops8g03808 8 78735070 78739230 ECH