Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03775 ATGGATACTAAAGAAAAGGTACATCAGAGTAAAGACGAGATGGGCATCAGAAAAGGTCCATGGAACGTTGAAGAGGACACCATTCTCGCAAATTACGTCGCCACCCACGGTCATCGTAGCTGGAATTCCGTTGCCCGCTCTGCAGGCACGTGGTCGAAAATTGCTCGGCACTTGCCCGGAAGGACAGACAATGAAATAAAAAATTATTGGAGGACCAGAGTGATTAAGCAAGCAAAGCAACTCAGGTGTGACGTCAACAGTGAACAGTTTAACGATGTCTTGCGTCACGTATGGATGCCCCTTTTGATTGAGCGGATTAAACCACCATCTGAAACTTACTACCCCGGGCAACTGGACCCAAACCCATGTGCAAGTGCAGCTCCAATCCCTGTCCATCACCAACACGGGTTACAAAGTTCAGGTTCAGGATCAGAGTGCTTAAACCACCACCAGACTCACTCCTTCTGCGACACTGGCACTTCGTTACAAGTTCATTCTGAACAAATGGGTCATGATGTTTCGGGTTTATACTCAAGTTTCAATAACCAAATGTTTGAACCGGGGAATTCGACCTTACCCTTAGATGGTGGTGGTGGGGACCTACTCGAGGGTTTGTGGAATGATGAGAATATATGGCTTATGCAGCAACTTTGTGATGACCTTGAAATAAAAGACAGCAGTTTCCTTGCGTGA 693 0.4661 MDTKEKVHQSKDEMGIRKGPWNVEEDTILANYVATHGHRSWNSVARSAGTWSKIARHLPGRTDNEIKNYWRTRVIKQAKQLRCDVNSEQFNDVLRHVWMPLLIERIKPPSETYYPGQLDPNPCASAAPIPVHHQHGLQSSGSGSECLNHHQTHSFCDTGTSLQVHSEQMGHDVSGLYSSFNNQMFEPGNSTLPLDGGGGDLLEGLWNDENIWLMQQLCDDLEIKDSSFLA* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03775 230 SMART sant 17 76 IPR001005 -
Rops8g03775 230 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Rops8g03775 230 Gene3D - 20 74 - -
Rops8g03775 230 Pfam Myb-like DNA-binding domain 18 72 IPR001005 -
Rops8g03775 230 ProSiteProfiles Myb-like domain profile. 13 74 IPR001005 -
Rops8g03775 230 CDD SANT 20 72 IPR001005 -
Rops8g03775 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 78 IPR017930 -
Rops8g03775 230 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 50 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03775 Rops-Chr8 78322101 78323220 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03775 6 107 MYB Transcription Factor Family AT3G06490 44.444 2.03e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops8g03775 Myb_DNA-binding 4.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03775 K09422 - gmx:100797220 233.032