Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03774 ATGGATACTAAAGAAAAGATGGAACAGGTACAGCAGAGTGAAGACGAGACGGGCGTCAGAAAAGGTCCATGGAGTGTTGAAGAGGACACCATTCTCGCAAACTACGTCGCCAACCACAGTGATGGCCTGAAGAGATCGGGGAAAAGTTGCAGATTAAGATGGTTAAACTACTTGCGTCCTGGTGTTCGGCATGGAAATATTACAGTCCAAGAGCAGATAATGATTCTTGACCTCCATTCTCGCTGGGGCAATAGGTGGTCGAAAATTGCTCGGCACTTGCCCGGAAGAACAGACAACGAAATAAAAAATTACTGGAGGACCAGAGTGATTAAGCAAGCAAACAAACTCAAGTGTGATGTCAACAGTGAACAGTTCAAGGATGTATTGCGTTACGTATGGATGCCCCTTCTGATTGAGCGGATTCAGCCACCCCCGGTTCAATTGGACCCAAACCCATGTGCAAGTGCAGCTCCAATCCTTGTCCATCACCAACACTGGTTGCAAAATTCATGTTCAGGATCAGAGTGGATAAACCAGACTTATTCCTCCTGCGACAGCGGCACTTCCTCGAACATGGACTTACAAGTTCACTCTGAACAACTGGGTCATAATGTTTCGGGTCTATGCCAAAGTTTCAATAATCAAATGTTTGAACCGGGGAATTCACTCTTACTGGAGAGTTTGTGGAACGATGAGAATATATGGCTCACGTGTGATGATGACCTTGAAATAAAGGACAGTTTCCTTGCGTGA 753 0.4555 MDTKEKMEQVQQSEDETGVRKGPWSVEEDTILANYVANHSDGLKRSGKSCRLRWLNYLRPGVRHGNITVQEQIMILDLHSRWGNRWSKIARHLPGRTDNEIKNYWRTRVIKQANKLKCDVNSEQFKDVLRYVWMPLLIERIQPPPVQLDPNPCASAAPILVHHQHWLQNSCSGSEWINQTYSSCDSGTSSNMDLQVHSEQLGHNVSGLCQSFNNQMFEPGNSLLLESLWNDENIWLTCDDDLEIKDSFLA* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03774 250 ProSiteProfiles Myb-like domain profile. 16 109 IPR001005 -
Rops8g03774 250 SMART sant 20 60 IPR001005 -
Rops8g03774 250 SMART sant 63 111 IPR001005 -
Rops8g03774 250 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 193 IPR044676 GO:0003700|GO:0006355|GO:0043565
Rops8g03774 250 Gene3D - 68 109 - -
Rops8g03774 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Rops8g03774 250 MobiDBLite consensus disorder prediction 1 22 - -
Rops8g03774 250 CDD SANT 68 107 IPR001005 -
Rops8g03774 250 CDD SANT 23 58 IPR001005 -
Rops8g03774 250 FunFam MYB transcription factor 68 131 - -
Rops8g03774 250 Gene3D - 21 63 - -
Rops8g03774 250 Pfam Myb-like DNA-binding domain 21 58 IPR001005 -
Rops8g03774 250 Pfam Myb-like DNA-binding domain 65 107 IPR001005 -
Rops8g03774 250 SUPERFAMILY Homeodomain-like 18 105 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03774 Rops-Chr8 78272202 78273258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03774 14 161 MYB Transcription Factor Family AT2G47190 61.392 1.22e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g03774 Myb_DNA-binding 2.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03774 K09422 - gmx:100797220 288.115