Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03773 ATGATGGAAAGTTTATCAGATAATGGCTCATATGGAAGTGAAGAAGCGATTCTAATAACCAAAGGTCCATGGACAGCAGAGGAGGATTCTGTTCTCTTCAATTTTATCACTGTCCACGGTGAAGGTCACTGGAATTCTGTTGCTCGCTGTGCAGGTCTAAAGAGAACGGGCAAAAGCTGCAGATTAAGATGGTTGAACTACTTGCGTCCAAGTGTTCGACGTGGGAATATAACCCTTCAAGAACAGCTCTTGATTCTTGACCTCCATTCCCGCTGGGGCAATCGGTGGTCGAAAATAGCTCAACACATACCAGGAAGAACAGACAACGAGATTAAGAATTATTGGAGGACCAGGGTGGTTAAGCAGGCTAAGCAACTCAAATGTGATGTTAATAGCAAACAGTTCAGACACACCTTGCGTTATGTATGGATGCCACGCATGGTGGAGCGAATCCAGGCTCAGGCCTCATCTGGTCCTTGCCATGTACAACCCAACAGTTTGATGTCATCATCACAGGCCTCATCTTACTCATCTGTGGCTGGTCTTTCTGATTCAAGTGCTTCTTACAATTTAATGGATGGTGGTGGTAGTTGCTCATCATCTAGTGTAGAAGAGAAACGTCCTAGTACTACCACCTCATGGCCTCCGAGAAACTATTCCGACATATCGGGCAATGATTTCGCTGGTGTGGATTTCTGGACAGATGAAAACATATGCTTCTTGCAACAGCAGCTAGCTGATGATTGGTGA 750 0.452 MMESLSDNGSYGSEEAILITKGPWTAEEDSVLFNFITVHGEGHWNSVARCAGLKRTGKSCRLRWLNYLRPSVRRGNITLQEQLLILDLHSRWGNRWSKIAQHIPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRHTLRYVWMPRMVERIQAQASSGPCHVQPNSLMSSSQASSYSSVAGLSDSSASYNLMDGGGSCSSSSVEEKRPSTTTSWPPRNYSDISGNDFAGVDFWTDENICFLQQQLADDW* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03773 249 FunFam Myb transcription factor 21 73 - -
Rops8g03773 249 CDD SANT 78 117 IPR001005 -
Rops8g03773 249 SMART sant 73 121 IPR001005 -
Rops8g03773 249 SMART sant 20 70 IPR001005 -
Rops8g03773 249 ProSiteProfiles Myb-like domain profile. 21 68 IPR001005 -
Rops8g03773 249 Gene3D - 20 73 - -
Rops8g03773 249 FunFam MYB transcription factor 78 141 - -
Rops8g03773 249 CDD SANT 23 68 IPR001005 -
Rops8g03773 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 68 IPR017930 -
Rops8g03773 249 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 197 IPR044676 GO:0003700|GO:0006355|GO:0043565
Rops8g03773 249 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Rops8g03773 249 MobiDBLite consensus disorder prediction 198 218 - -
Rops8g03773 249 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Rops8g03773 249 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Rops8g03773 249 Gene3D - 78 119 - -
Rops8g03773 249 SUPERFAMILY Homeodomain-like 20 115 IPR009057 -
Rops8g03773 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03773 Rops-Chr8 78261146 78262440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03773 14 248 MYB Transcription Factor Family AT2G47190 49.225 6.25e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g03773 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03773 K09422 - gmx:547458 330.102