Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03759 ATGGCCACCAACCACGATCAACAACACTTCAACCACATCACCCCTCTCAAACGACCTTGGCATCATTCCAACCAACCAGGTACAGACCAAGTGGATGGCGGGTCTCATGTAAAAGTTTATGTTGCACCAGTTCCGAGAACAGCTACTGAGGCCGATATCCGTCTTGTGTTCGAAGGACATGGAACTATTGTTGAGGTTGTTCTTTTAAAGGATAAGAGAACTGGTGCACGACAAGGAAGTTGTTTTGTGAAATATTCAACATTAAATGAAGCTGACAGGGCTATTAAGGCTTTAAGCAATCAGTATACATTTCCTGGGGAATCATGTCCTGTCGTGGTCAGATTTGCTGATCGAGAACTTGAGCGTCTTGGGGTTCGACGAAACTTGGAAAAGAAAGATCCTTTAGAAGAGGTGGCGAATAAAGTTTTTGTTGGTTACATCAACAAAGAAGCTTCAAAGAAGGAAATTGAAGAAATATTTTCCCCTTATGGGCATGTGGAAGATGTCTTCATCTCGAACAGTCGGGGATATGGTTTTGTCAAATTTTCTAATAGAGAAATGGCATTGGCAGCAATCAAAGGGTTGAATAAAATGTTCACGATGAGGGGTTGTGATCATCCATTGATTGTTCGTTTTGCGGATCCTAAGAAACCTAAGACTGGAGAATCAAGGGGCAACTATTTATCTGGGAATGCAAATTTTGGTCCCTGTTCTCAAGAACCAGCAGTTTGGCCACTGCCAAATTTTGGTGATTCCAATACTGGATGTAATATTCTGCCCATTGCCCCACATCATTCCACAATTCCACACCCACAAGTTGCTTCTCATATGCCAAACTGGGAACCTGGTGCTACTGCATTACAACAACCATTTATTCCCCAACAAGCACATTCACAATTGGCTTCAATGCCTTTACAGTCTATTCAAGCTCCGAAGTTACCTTCTCAACCATTTATTACTGAGGTGCAGAGACAATCTCATCCAGCAGATTCATCAGTTCAAAATATAGAGCAGCAACTAAATTCTCAGCTGCCTACTCAGAGTGGAAGCAATCCTAATATAGTTGCTGGCAGTACCTCACCTGATCTGCCAACAAGTCCCCAAGATGAAGATTTTCCAGATTGTGACTGGAGTGAACATTATTGCCCTGATGGTCATAAGTACTACTACAACTGTGTCACTTGTGAAAGCAGATGGGAGAAGCCTGAGGAGTATGCTCTGTATGAGAAAGAATCACAAATGCAGCAGGAGCAGGAGGATCTTAGCTGTCTTCACTCACAATTGTCGTTATCTTCCTCACAAGAAGTTGCTCAAAGACAACAGGAAACAAATCATGATCACATGCAGTCAGAAACAAATCCTGTTGTTGGACAGGTGTAA 1380 0.4246 MATNHDQQHFNHITPLKRPWHHSNQPGTDQVDGGSHVKVYVAPVPRTATEADIRLVFEGHGTIVEVVLLKDKRTGARQGSCFVKYSTLNEADRAIKALSNQYTFPGESCPVVVRFADRELERLGVRRNLEKKDPLEEVANKVFVGYINKEASKKEIEEIFSPYGHVEDVFISNSRGYGFVKFSNREMALAAIKGLNKMFTMRGCDHPLIVRFADPKKPKTGESRGNYLSGNANFGPCSQEPAVWPLPNFGDSNTGCNILPIAPHHSTIPHPQVASHMPNWEPGATALQQPFIPQQAHSQLASMPLQSIQAPKLPSQPFITEVQRQSHPADSSVQNIEQQLNSQLPTQSGSNPNIVAGSTSPDLPTSPQDEDFPDCDWSEHYCPDGHKYYYNCVTCESRWEKPEEYALYEKESQMQQEQEDLSCLHSQLSLSSSQEVAQRQQETNHDHMQSETNPVVGQV* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03759 459 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 215 IPR000504 GO:0003723
Rops8g03759 459 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 118 IPR000504 GO:0003723
Rops8g03759 459 MobiDBLite consensus disorder prediction 429 459 - -
Rops8g03759 459 Gene3D - 359 422 - -
Rops8g03759 459 SUPERFAMILY WW domain 376 408 IPR036020 GO:0005515
Rops8g03759 459 MobiDBLite consensus disorder prediction 343 371 - -
Rops8g03759 459 MobiDBLite consensus disorder prediction 1 34 - -
Rops8g03759 459 MobiDBLite consensus disorder prediction 343 366 - -
Rops8g03759 459 ProSiteProfiles WW/rsp5/WWP domain profile. 377 404 IPR001202 GO:0005515
Rops8g03759 459 SMART ww_5 372 404 IPR001202 GO:0005515
Rops8g03759 459 SMART rrm1_1 141 211 IPR000504 GO:0003723
Rops8g03759 459 SMART rrm1_1 38 114 IPR000504 GO:0003723
Rops8g03759 459 ProSitePatterns WW/rsp5/WWP domain signature. 377 402 IPR001202 GO:0005515
Rops8g03759 459 Gene3D - 128 223 IPR012677 -
Rops8g03759 459 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 106 IPR000504 GO:0003723
Rops8g03759 459 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 200 IPR000504 GO:0003723
Rops8g03759 459 SUPERFAMILY RNA-binding domain, RBD 8 124 IPR035979 GO:0003676
Rops8g03759 459 SUPERFAMILY RNA-binding domain, RBD 136 224 IPR035979 GO:0003676
Rops8g03759 459 CDD WW 375 404 IPR001202 GO:0005515
Rops8g03759 459 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 109 399 - -
Rops8g03759 459 Gene3D - 29 123 IPR012677 -
Rops8g03759 459 Pfam WW domain 376 402 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03759 Rops-Chr8 78138036 78145079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03759 35 219 Eukaryotic Initiation Factors Gene Family AT1G71770 28.571 1.79e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03759 K13207 - gmx:100795107 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03759 8 78138036 78145079 Rops8g03759 8 78138036 78145079 ECH