Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03755 ATGTCGAAGAGGAAGTTCGGATTCGAAGGTTTTGGCATAAACCGCCAATCAACCTATAGTTTCGAGCGCTCTCAAGCACCTCAACGACTCTATGTCCCTCCGTCGTCGCGCCACGGCCACGACCACCACGAAGACACCGACCTCGACAACATCGAATACGATGACAACGATGGTGCCAGGGACGACGGAAACAACAACAACAATAACAATAACAAGGGTGGTGGCGAGGATGATGAAATCGATCCACTTGACGCCTTCATGGAAGGGATTCATGAAGAGATGAGGGCTGCGCCGCCTCCGATGCCGAAGGAGAAGGCAGAGGACAGGTACAAAGATGATGTTGAAGACGATCCCATGGAGAGTTTTCTGAAGGCGAAGAAGGACCTAGGGTTGACCCTGGCTTCGGAGGCGCTGCATGCTGGTTATGACTCTGATGAGGAGGTTTATGCTGCTGCTAAGGCTGTGGATGCTGGTTTGCTAGAGTATGATTCTGATGATAACCCTATTGTTCTTGACAAGAAGAAAATTGAACCCATACCTGCCCTGGATCACTCTTCCATTGATTATGAGCCCTTTAATAAGGATTTTTATGAGGAAACCCCTTCAATATCAGGTATGAGTGAGCAAGATGTAACTGAATATCGGAAGAGTTTGGCTATTCGTGTATCAGGTTTTGATGTTCCGAAGCCGACAAAGACATTTGAGGACTGTGGGTTCTCTTCACAGATTATGAGTGCTATAAAAAAACAGGGTTATGAGAAGCCCACGTCTATACAATGCCAAGCTTTACCAATTGTGCTTTCTGGTAGAGATATCATTGGTATAGCAAAAACTGGTTCCGGTAAAACTGCTGCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCGGAACTTCAGAAGGAGGAGGGTCCAATAGGAGTGATATGTGCACCTACTAGAGAATTGGCACATCAGATATATCTGGAGGCCAAGAAATTTGCAAAACCATATGGTGTACGTGTTTCTGCTGTCTATGGTGGAATGTCAAAACTCGATCAGTTCAAAGAACTCAAGGCAGGCTGCGAGATAGTTGTTGCTACCCCTGGCAGATTGATAGACATGCTGAAAATGAAAGCACTGACAATGATGAGAGCAACTTACCTGGTGCTTGACGAGGCTGATCGGATGTTTGATCTTGGATTTGAGCCACAAGTAAGGTCCATTGTTGGTCAGATTAGGCCAGACCGCCAAACTTTACTCTTTTCTGCAACAATGCCTCGTAAAGTTGAAAAGTTGGCCAGGGAAATCCTTACTGATCCTATTAGAGTAACTGTTGGGGAGGTGGGGATGGCAAATGAAGACATTACTCAAGTTGTTCAAGTGATTCCTTCTGATGCTGAGAAATTGCCTTGGCTTCTAGAGAAGCTGCCTGAGATGATTGATCAAGGTGATACCTTAGTATTTGCTTCCAAGAAGGCCACTGTGGATGAAATTGACTCACAGTTGGCTCAGAGAGGGTTTAAAGTTGCTGCCCTGCATGGTGATAAGGATCAAGCTTCTCGTATGGATATTCTACAGAAGTTTAAATCTGGCATTTACCACATGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTCGACATCAAGTCAATTAAAACAGTGGTAAACTTTGATATTGCAAAAGATATGGACATGCATGTTCATCGCATTGGAAGAACAGGCCGTGCTGGTGACAAGGATGGAGTTGCATACACTCTTATAACTCAGAAAGAAGCACGATTTGCTGGGGAATTGGTTAATAGCGTAGTTGCTGCTGGTCAGAATGTGTCCATGGAGTTGATGGATCTTGCTATGAAGGATGGAAGATTCAGGTCGAAACGTGATGCCAGAAAAGGAGGTGGGAGAAAGGGCAAAGGCAGAGGGGGAGGTGGTGGTGGCAGAGGTGTGCGCGGAGTGGATTTTGGCTTGGGCATTGGCTATAATCCAGAGTCTAACAATGCATCATCTACCACAGTTCCAAGTCGATCTGCCGCTGTAAATTCTCTGCGAACAGGAATGATGTCACAGTTTAGGAGTAACTTCGTTGCTGCTTCATCAAACTCTCAAAATCAAGGATTCAGTAACAATACAAGCATGGCTGCTAATAAGAGACCAACACTCGCTGGCTTTGTATCTGGTGGATCAATCGGTGGTGAGATAAATACTCATCAGCGTACTGCTTCATCTAGTCCTGCTACATCAGCTGTAAATTCCGTTAGTCAAAGTTCTGGAGTAAATCCTGGTCAGAATAGCACCAACAGTTCTAAACCTAGAGAAAGGCGGAGGCCATCAGGTTGGGATAGATAG 2331 0.4539 MSKRKFGFEGFGINRQSTYSFERSQAPQRLYVPPSSRHGHDHHEDTDLDNIEYDDNDGARDDGNNNNNNNNKGGGEDDEIDPLDAFMEGIHEEMRAAPPPMPKEKAEDRYKDDVEDDPMESFLKAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGLLEYDSDDNPIVLDKKKIEPIPALDHSSIDYEPFNKDFYEETPSISGMSEQDVTEYRKSLAIRVSGFDVPKPTKTFEDCGFSSQIMSAIKKQGYEKPTSIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKPYGVRVSAVYGGMSKLDQFKELKAGCEIVVATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQVVQVIPSDAEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIDSQLAQRGFKVAALHGDKDQASRMDILQKFKSGIYHMLIATDVAARGLDIKSIKTVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSVVAAGQNVSMELMDLAMKDGRFRSKRDARKGGGRKGKGRGGGGGGRGVRGVDFGLGIGYNPESNNASSTTVPSRSAAVNSLRTGMMSQFRSNFVAASSNSQNQGFSNNTSMAANKRPTLAGFVSGGSIGGEINTHQRTASSSPATSAVNSVSQSSGVNPGQNSTNSSKPRERRRPSGWDR* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03755 776 Gene3D - 195 440 IPR027417 -
Rops8g03755 776 MobiDBLite consensus disorder prediction 1 81 - -
Rops8g03755 776 MobiDBLite consensus disorder prediction 617 644 - -
Rops8g03755 776 CDD DEADc_DDX42 243 439 - -
Rops8g03755 776 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 196 612 - -
Rops8g03755 776 SMART ultradead3 251 453 IPR014001 -
Rops8g03755 776 Gene3D - 441 616 IPR027417 -
Rops8g03755 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 441 IPR027417 -
Rops8g03755 776 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 463 612 IPR001650 -
Rops8g03755 776 MobiDBLite consensus disorder prediction 13 31 - -
Rops8g03755 776 Pfam Helicase conserved C-terminal domain 467 572 IPR001650 -
Rops8g03755 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 608 IPR027417 -
Rops8g03755 776 CDD SF2_C_DEAD 450 582 - -
Rops8g03755 776 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 384 392 IPR000629 -
Rops8g03755 776 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 263 438 IPR014001 -
Rops8g03755 776 MobiDBLite consensus disorder prediction 725 762 - -
Rops8g03755 776 MobiDBLite consensus disorder prediction 35 49 - -
Rops8g03755 776 MobiDBLite consensus disorder prediction 720 776 - -
Rops8g03755 776 Pfam DEAD/DEAH box helicase 256 427 IPR011545 GO:0003676|GO:0005524
Rops8g03755 776 FunFam probable ATP-dependent RNA helicase DDX17 194 441 - -
Rops8g03755 776 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 232 260 IPR014014 GO:0003724
Rops8g03755 776 SMART helicmild6 491 572 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03755 Rops-Chr8 78006769 78014397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03755 232 588 Eukaryotic Initiation Factors Gene Family AT3G13920 34.722 3.28e-61 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03755 K12835 - gmx:100814854 1328.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03755 8 78006769 78014397 Rops8g03755 8 78006769 78014397 ECH