Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03742 ATGGCTTCGATTCAACGGCTATCGAGTTCTGGATCCGAAGGTGGAGATCTGCAAATCGACGAGAGGAAGAGGAAGAGGATGTTATCAAACCGTGAATCGGCGAGGAGATCGAGGATGAGGAAACAGAAGCAGTTGGAGGATCTGAGCGATGAAGTCAGCAGATTGCAAAGTGCAAATAGGAAGCTGGCGGAGAGCATAAAGGAGAAGGAAGAAGCGTTCATAGAAACTGAAGCCGCTAACGGAATCCTTAGGGCTCGAACTATGGAATTGACCGATCGATTGCGGTTTCTGAATTCGATCCTTGAAATCGCTGAAGAGGTTAGCGGTTACTCTGTTGAGATTCCTGAGATTCCAGATCCTCTTCTCAGACCGTGGCAGATTCCTCAACCCTACACAACTGATCATGGCATCTGCTGA 417 0.482 MASIQRLSSSGSEGGDLQIDERKRKRMLSNRESARRSRMRKQKQLEDLSDEVSRLQSANRKLAESIKEKEEAFIETEAANGILRARTMELTDRLRFLNSILEIAEEVSGYSVEIPEIPDPLLRPWQIPQPYTTDHGIC* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03742 138 MobiDBLite consensus disorder prediction 1 15 - -
Rops8g03742 138 SUPERFAMILY Leucine zipper domain 22 69 IPR046347 GO:0003700|GO:0006355
Rops8g03742 138 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 20 68 IPR004827 GO:0003700|GO:0006355
Rops8g03742 138 MobiDBLite consensus disorder prediction 16 51 - -
Rops8g03742 138 FunFam BZIP transcription factor 20 71 - -
Rops8g03742 138 Coils Coil 31 75 - -
Rops8g03742 138 MobiDBLite consensus disorder prediction 1 51 - -
Rops8g03742 138 SMART brlzneu 18 82 IPR004827 GO:0003700|GO:0006355
Rops8g03742 138 CDD bZIP_plant_GBF1 23 73 IPR045314 GO:0003700|GO:0006355
Rops8g03742 138 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 25 40 IPR004827 GO:0003700|GO:0006355
Rops8g03742 138 PANTHER BZIP TRANSCRIPTION FACTOR 44 8 104 - -
Rops8g03742 138 Gene3D - 20 77 - -
Rops8g03742 138 Pfam bZIP transcription factor 22 71 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03742 Rops-Chr8 77845526 77846626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03742 20 130 bZIP Transcription Factor Family AT3G62420 60.360 5.76e-44 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops8g03742 bZIP_1 3.3e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03742 K25786 - gmx:780550 202.986