Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03740 ATGAACTCCAAGGGCCTCGATTTCAACACAGACAAAGTCCTAGCGAGGGAGTTCCTTTCCAACTTCGCAGATGCCAATGGAGAAGCCAAATACTTGAACATCCTACAAGACGTCGCAAATCACAAAACTCGAGCAATCCAAATCGACCTTGACGACTTAATTAATTATAAGGATCTAGATGAGGAATTTCTGGGACGTGTTACTGAGAATACTCGAAGGTATATTGGGATTTTCGCTGACGCAATCGATGAGCTCATGCCGGAACCCACTGAGACCTTCACTGATGATGATGACCAGGACATTCTGTTGAACCAAAGATCTCAGAAATCTGATAGAGGAACCGAAGGTGCTGATGATTCCGACCCACTTCAGAAGATGCCTCCTGAAATCAAGCGCTACTTTGAAGTTTATATTAGAGCATCTCCAAAAGGAAGGCCATTTACAATTAGGGAGGTGAAGGCTTCGAATATTGGTCAGCTTGTGAGGATATCTGGTATAGTGACGCGTTGCTCGGATGTTAAACCATTGATGCAGGTGGCTGTATACACTTGTGAGGATTGTGGTTTTGAAATTTACCAGGAAGTAACAGCTCGAGTCTTCATGCCTTTGTTTGAATGTCCATCAAAGCGCTGTCAGACAAATAGAAGTAAGGGGAACATCATCCTTCAACTGAGAGCATCAAAGTTTTTGAGATTTCAAGAGGCAAAAATTCAAGAATTAGCTGAACATGTTCCTAAAGGCCATATTCCACGAACAATGACTGTTCATTTTAGGGGAGAACTCACAAGAAAGGTTGCTCCAGGTGATGTGGTTGAATTATCAGGGATTTTTCTTCCTATACCTTACATTGGTTTTAGAGCAATGCGTGCTGGCCTAGTTGCTGACACTTACTTAGAGGCCATGTCTGTAACTCATTTTAAGAAAAAATATGAAGAATATGAACTTAGAGGAGATGAGGAAGAGCAGATTGCACGTTTAGCAGAAGATGGTGACATCTACAATAAGTTGGCTCGATCACTGGCTCCTGAAATTTTCGGACATGAAGATGTTAAAAAAGCACTGCTGCTTCTCCTTGTTGGTGCTCCCCATCGGAAGTTGAAAGATGGGATGAAGATTAGAGGAGATTTACATATATGTTTGATGGGTGATCCTGGTGTTGCCAAGAGTCAACTTCTTAAACACATAATCAATGTAGCACCCAGGGGGGTGTACACCACTGGCAGAGGAAGTAGTGGAGTTGGTCTAACTGCTGCTGTTCAGAAAGATCCAGTGACAAATGAGATGGTTCTGGAAGGTGGAGCATTGGTGCTAGCGGATATGGGCATATGTGCCATTGATGAATTTGACAAGATGGATGAATTGGATCGTACAGCTATACATGAAGTTATGGAACAACAGACTGTTAGCATTGCCAAGGCTGGGATCACTACATCACTGAATGCGAGGACTGCTGTCCTTGCTGCAGCTAATCCAGCATGGGGAAGATATGATCTAAGAAGAACTCCAGCAGAAAATATTAATCTTCCACCTGCCCTACTATCAAGGTTTGATCTGCTGTGGTTAATCCTTGATCGAGCTGATATGGATAATGATCTTGAAATGGCTAGGCATATTGTCTATGTCCACCAAAATAAAGAGTCTCCAGCTCTAGGATTCACTCCTCTTGAACCATCTGTTCTCCGTGCATACATATCGGCTGCAAGAAGATTGTCTCCTAGTGTCCCAAGGGAACTGGAAGAGTATATTGCTAGTGCATACTCTAGCATTCGTCAAGAAGAAGCAAAGTCCAATGCTCCACATTCCTATACGACTGTCAGAACATTGCTCAGTATTCTCCGCATATCAGCTGCGCTAGCGAGACTCCGTTTTTCTGAAACTGTTGTTCAGAGTGATGTGGACGAGGCACTGAGGTTAATGCAGATGTCAAAATTCTCTTTATACTCTGATGAGCGTCAAAGATCTGGTCTGGATGCCATATCTGATATTTATTCCATACTGCGAGATGAAGCTGCTAGAAGTAACCAAATGGATGTCAGCTATGCCCGTGCATTGAATTGGATATCTAGGAAGGGGTACAGTGAAGCCCAGTTGAAAGAGTGTTTGGAGGAGTATGCAGCATTAAATGTATGGCAGATACATCCTCACACCTTCGACATACGATTTATTGATGCTTGA 2175 0.4299 MNSKGLDFNTDKVLAREFLSNFADANGEAKYLNILQDVANHKTRAIQIDLDDLINYKDLDEEFLGRVTENTRRYIGIFADAIDELMPEPTETFTDDDDQDILLNQRSQKSDRGTEGADDSDPLQKMPPEIKRYFEVYIRASPKGRPFTIREVKASNIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSKRCQTNRSKGNIILQLRASKFLRFQEAKIQELAEHVPKGHIPRTMTVHFRGELTRKVAPGDVVELSGIFLPIPYIGFRAMRAGLVADTYLEAMSVTHFKKKYEEYELRGDEEEQIARLAEDGDIYNKLARSLAPEIFGHEDVKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMDELDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHIVYVHQNKESPALGFTPLEPSVLRAYISAARRLSPSVPRELEEYIASAYSSIRQEEAKSNAPHSYTTVRTLLSILRISAALARLRFSETVVQSDVDEALRLMQMSKFSLYSDERQRSGLDAISDIYSILRDEAARSNQMDVSYARALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03740 724 SUPERFAMILY Nucleic acid-binding proteins 15 300 IPR012340 -
Rops8g03740 724 Gene3D - 176 230 - -
Rops8g03740 724 Gene3D - 317 649 IPR027417 -
Rops8g03740 724 Gene3D - 12 103 - -
Rops8g03740 724 MobiDBLite consensus disorder prediction 88 125 - -
Rops8g03740 724 CDD MCM7 335 642 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Rops8g03740 724 Gene3D - 149 277 IPR012340 -
Rops8g03740 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 199 211 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Rops8g03740 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 126 138 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Rops8g03740 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 164 175 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Rops8g03740 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 182 193 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Rops8g03740 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 291 301 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Rops8g03740 724 SMART mcm 145 644 IPR031327 GO:0003677|GO:0005524|GO:0032508
Rops8g03740 724 Pfam MCM P-loop domain 320 542 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops8g03740 724 FunFam DNA replication licensing factor MCM7 176 230 - -
Rops8g03740 724 ProSitePatterns MCM family signature. 441 449 IPR018525 GO:0003677|GO:0005524|GO:0006260
Rops8g03740 724 MobiDBLite consensus disorder prediction 99 125 - -
Rops8g03740 724 FunFam DNA replication licensing factor MCM7 11 103 - -
Rops8g03740 724 FunFam DNA replication licensing factor MCM7 317 649 - -
Rops8g03740 724 ProSiteProfiles MCM family domain profile. 332 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops8g03740 724 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 16 655 IPR031327 GO:0003677|GO:0005524|GO:0032508
Rops8g03740 724 Pfam MCM AAA-lid domain 559 642 IPR041562 -
Rops8g03740 724 Pfam MCM OB domain 149 279 IPR033762 -
Rops8g03740 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 373 388 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops8g03740 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 461 474 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops8g03740 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 485 497 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops8g03740 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 512 520 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops8g03740 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 433 447 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops8g03740 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 651 IPR027417 -
Rops8g03740 724 Pfam MCM N-terminal domain 16 138 IPR027925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03740 Rops-Chr8 77826076 77831297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03740 4 722 Core DNA Replication Machinery Family AT4G02060 83.727 0.0 1254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03740 K02210 - qsu:112007744 1286.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03740 8 77826076 77831297 Rops8g03740 8 77826076 77831297 ECH