Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03736 ATGGCAGAGGTTGTCTTGTCAGTCGATGATTTGAAGTTACTTTCTGATATTTCTCGCTGTAGAATATGCCATGACGAAGAATTTGAGAGCTTAAAAAACTTAGAAGCACCTTGTGCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAATACAATCTGTGAAATATGTCTCCAGCAATATGAACCTGGCTATACAGCTCCTCCAAAGAAGTCTCAGATAAATGATGAAGCAATGTCCATTAGGTTGGAGCGAGAGCTGTCAAATGCAAGAATGGAGGCTATGGTCGAAGGAGTTGCAATAGAAAGCGAGTACTCTGAATGCAGCTCTGCCGCTGACAGAAGCGCGTCTTGCTGTCGATCACTAGCATTAGCTTTTACACTTGTCTTACTTGTAAGACATCTTTTTGCCGTGCTTACAAATGGAACGGAGGATTACCCATTTTCACTTCTTACAGTCATTGTACTAAAGACTAGCGGAATTATTTTAACCATGTACATAATTATTAGGACGATCGGAGCCATTCATAACAGTATTCAGCGCCGCTATCAGGATTCTTATTACGACACATCCATGTCTGATGAAGATGACGAAAATTTAATACATTCCTAA 642 0.405 MAEVVLSVDDLKLLSDISRCRICHDEEFESLKNLEAPCACSGTVKFAHRDCIQRWCNEKGNTICEICLQQYEPGYTAPPKKSQINDEAMSIRLERELSNARMEAMVEGVAIESEYSECSSAADRSASCCRSLALAFTLVLLVRHLFAVLTNGTEDYPFSLLTVIVLKTSGIILTMYIIIRTIGAIHNSIQRRYQDSYYDTSMSDEDDENLIHS* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03736 213 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Rops8g03736 213 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 17 192 IPR033275 -
Rops8g03736 213 CDD RING_CH-C4HC3_MARCH 20 67 - -
Rops8g03736 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 77 IPR013083 -
Rops8g03736 213 Pfam Protein of unknown function (DUF3675) 73 182 IPR022143 -
Rops8g03736 213 SUPERFAMILY RING/U-box 18 72 - -
Rops8g03736 213 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Rops8g03736 213 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Rops8g03736 213 SMART ringv_2 19 68 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03736 Rops-Chr8 77776170 77788309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03736 20 108 C3H Transcription Factor Family AT2G37950 33.333 3.35e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03736 - - gmx:100802379 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03736 8 77776170 77788309 Rops8g03736 8 77776170 77788309 ECH
Rops8g03736 8 77776170 77788309 Rops6g02083 6 38923976 38926303 PCT